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The map label for this gene is yciR [C]

Identifier: 209550345

GI number: 209550345

Start: 2810587

End: 2812935

Strand: Direct

Name: yciR [C]

Synonym: Rleg2_2766

Alternate gene names: 209550345

Gene position: 2810587-2812935 (Clockwise)

Preceding gene: 209550344

Following gene: 209550346

Centisome position: 61.94

GC content: 60.24

Gene sequence:

>2349_bases
ATGAACAATTCCGTTGAGAACAGATTTTTTGGAATTGTTTGCGGAGCGCTGCTCGTTTTTGTCGCTCCCCTCTTTGTTCT
CTTCCTTTTTCTTTCCTCGGAACGGGCCGACAAGGAAATACGCGATCACATTTCCGTTCTCCTTGTCGCCAATGCCCAGG
CGCTGGCAAAGCCACTCTGGGACCTCGATGAGGAGAGTGTCACCCAGATCAGCGCGACGGTCGTTTCCCAGGGCGCCATC
GTCAAGGTCGAGGTGCGTGATCAGTCGGGCCAGCTCGACATCAGTCAGTCCACCATTCCGCGCTCCTTCGACGGCAAGCT
CGTGCAGGTGTCACGCGCCATCATCTACAACACGGTCGACGGTCCGAAGAACCTCGGCAGCATCAGCGTCTATTATCCCG
CGCTCGGTCTGTTTTCCGGCCTGAAGCAGGAAGAGGTCGTCTTCATCTCGATCTTCATCTTCGCGGTTCTGGCGGTTTTC
GGCACCGCGCTGATCGGCAACCGGTTCTTCGTCATCCAGCCGCTGATGCGGCTGACGGCCGCGATCGAGGCCACCCGGCA
GCTCGGCTCCCGCCACCATGTCGACTGGCAGTCGAACGACGAGATGGGACGGCTTGCCCGCAGCTTCAACGAGATGCAGA
CAAAGCTCGAAAGCGAGGAGAAGGAGCTGAAGTTCGCCCATCGCCGCGCCACCGACATCTATAATCTGACGCCCGCCATG
CTTTTTTCGCTCGACGAGGAAGACCGTATCACCGCCGTCAGCGATTACTGGCTGCTTGCCACAGGCTATAACCGCGCCGC
CGTCATCGGCCGCAACTTCGCCGATCTCGTGACATCGACCACCCGCGACAAGTTCAAGCGCCGCCAGGCGGAAAGCGGCA
TTGCTGTCACCGTCAAGTTCGTCTGCCTGGACGGCCGCACCATGGACGTCCTCATCATGGAGTCGGAGGCGGAAGCCGGC
GCTCACGACCGCCTCTCGCTGTCGGTCATGACCGATGTGACCGAACTCAAGGCATCCGAGGACCGCAACCACCGCCAGGC
GATCACCGATCACCTGACCGGGTTGCTCAATCGCCAGGGCTTCGAAGCCGTCCTCGACAACAAGATCGCCGCCGCCGACG
CGGCCGGCCAGGAGCTCGCCTGCCTCTTCGTCGATCTCGATCGCTTCAAGTGGATCAACGACAATATGGGCCATGCCGCC
GGCGACATGGCGCTGATCGAGCTCGTCGAGCGCCTGAAGACCTATCTCGCTCCCTCCGATGAGGCGGCCCGTCTCGGCGG
CGACGAATTTGCCATCCTGCTGCCGGCGAAGGATGCCGAAAAACGCGCCAGGATGATGTGCGAGCAGATCGCCTCGATCT
TCGAAACGCCGTTTGCCCCCGACATGCATCTGAGTGCTTCCGTCGGCATCGCCATTTATCCGCATCATGCCGCAACCGCC
GCCGAACTGCTGCAGAAATCGGATCTGGCAATGTATGCCAAGAAACGCGACGGCAAGAATGGCGCGCAGCTTTTCGACAA
CGCCATGCTCGACCGTGCCCGCAGCCGCGCCGAGATCGAGGCCAATATCGAATCCGGCCTCGTCGACAACTGGTTCGAGG
CCTTCCTGCAGCCGATCGTCAATCTGAACGGCCGCGGTATTGCCGGTTTCGAAGCCCTGATGCGCCTCAACCATCCGCAG
AAAGGCTTGATGCCGCCGGCCGAGATCATCAGCGTTGCCGAGGAGACAGGAAAAATCGTCCGCGTCGGCAATGTCATCAT
GGAAAAGGCGATCGCCAATCTCGCGAAGATCTCCCGCATATCCGGCATGCAGGATAGCTATCTCGCCATCAACTTCTCGC
CCCTGCAGTTCGAGCCGGCGCTGCCGGCCCGGCTTGCCGCCATCGTCGGTCGCCATGGCATCCATCCAGAGCGCATTGTT
GTCGAGATCACCGAAGCCGTGCTGATGCACGACAATCCGCAGATCCGCATGATCGTCACCGAGCTTCGCCGCTTCGGTTG
CCGTATCGCGCTCGATGATTTCGGCACCGGCTATTCGTCACTGAGCTACCTCAACCGCTTTCCTGTCGACATCATCAAGA
TCGACCAGTCCTTCACCCGCGCGATCAACGATGGCGACGATGACGTGCGCCAGAAGAGCCGCATGCTGATCGAAGGCATT
ACCACGCTCTCTCACAAGATGAACTGCACCGTCATCGCCGAGGGTATCGAGACCGAAGAGGAATGCCGCACGCTCCACCA
GATGGGGCTTGATTATGGCCAGGGTTACCTCTTCCATCGTCCGAAACACGCAGCCGTACTCATCGAGGAACTGATGGCCT
CGGAAGCGGCCGTCGCACGCGCCTCATGA

Upstream 100 bases:

>100_bases
CATTTAACGTATTCATGAAAGCATGCTTCGTCAGCTGCAAAGAAGCCCGCCTTAGCGCGCGACAGCAGATAAGGGTCGGC
CTGGGGGAGTAGACGGAACC

Downstream 100 bases:

>100_bases
ACAAGGAGATGAGATGATGAAAAAGCTCCTGCTTCTCGCATGCCTGGCGCTGCCCTGCGCCGCCCATGCGCAAACGGTGA
CCTTCACCACCGAGGATTAC

Product: PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 782; Mature: 782

Protein sequence:

>782_residues
MNNSVENRFFGIVCGALLVFVAPLFVLFLFLSSERADKEIRDHISVLLVANAQALAKPLWDLDEESVTQISATVVSQGAI
VKVEVRDQSGQLDISQSTIPRSFDGKLVQVSRAIIYNTVDGPKNLGSISVYYPALGLFSGLKQEEVVFISIFIFAVLAVF
GTALIGNRFFVIQPLMRLTAAIEATRQLGSRHHVDWQSNDEMGRLARSFNEMQTKLESEEKELKFAHRRATDIYNLTPAM
LFSLDEEDRITAVSDYWLLATGYNRAAVIGRNFADLVTSTTRDKFKRRQAESGIAVTVKFVCLDGRTMDVLIMESEAEAG
AHDRLSLSVMTDVTELKASEDRNHRQAITDHLTGLLNRQGFEAVLDNKIAAADAAGQELACLFVDLDRFKWINDNMGHAA
GDMALIELVERLKTYLAPSDEAARLGGDEFAILLPAKDAEKRARMMCEQIASIFETPFAPDMHLSASVGIAIYPHHAATA
AELLQKSDLAMYAKKRDGKNGAQLFDNAMLDRARSRAEIEANIESGLVDNWFEAFLQPIVNLNGRGIAGFEALMRLNHPQ
KGLMPPAEIISVAEETGKIVRVGNVIMEKAIANLAKISRISGMQDSYLAINFSPLQFEPALPARLAAIVGRHGIHPERIV
VEITEAVLMHDNPQIRMIVTELRRFGCRIALDDFGTGYSSLSYLNRFPVDIIKIDQSFTRAINDGDDDVRQKSRMLIEGI
TTLSHKMNCTVIAEGIETEEECRTLHQMGLDYGQGYLFHRPKHAAVLIEELMASEAAVARAS

Sequences:

>Translated_782_residues
MNNSVENRFFGIVCGALLVFVAPLFVLFLFLSSERADKEIRDHISVLLVANAQALAKPLWDLDEESVTQISATVVSQGAI
VKVEVRDQSGQLDISQSTIPRSFDGKLVQVSRAIIYNTVDGPKNLGSISVYYPALGLFSGLKQEEVVFISIFIFAVLAVF
GTALIGNRFFVIQPLMRLTAAIEATRQLGSRHHVDWQSNDEMGRLARSFNEMQTKLESEEKELKFAHRRATDIYNLTPAM
LFSLDEEDRITAVSDYWLLATGYNRAAVIGRNFADLVTSTTRDKFKRRQAESGIAVTVKFVCLDGRTMDVLIMESEAEAG
AHDRLSLSVMTDVTELKASEDRNHRQAITDHLTGLLNRQGFEAVLDNKIAAADAAGQELACLFVDLDRFKWINDNMGHAA
GDMALIELVERLKTYLAPSDEAARLGGDEFAILLPAKDAEKRARMMCEQIASIFETPFAPDMHLSASVGIAIYPHHAATA
AELLQKSDLAMYAKKRDGKNGAQLFDNAMLDRARSRAEIEANIESGLVDNWFEAFLQPIVNLNGRGIAGFEALMRLNHPQ
KGLMPPAEIISVAEETGKIVRVGNVIMEKAIANLAKISRISGMQDSYLAINFSPLQFEPALPARLAAIVGRHGIHPERIV
VEITEAVLMHDNPQIRMIVTELRRFGCRIALDDFGTGYSSLSYLNRFPVDIIKIDQSFTRAINDGDDDVRQKSRMLIEGI
TTLSHKMNCTVIAEGIETEEECRTLHQMGLDYGQGYLFHRPKHAAVLIEELMASEAAVARAS
>Mature_782_residues
MNNSVENRFFGIVCGALLVFVAPLFVLFLFLSSERADKEIRDHISVLLVANAQALAKPLWDLDEESVTQISATVVSQGAI
VKVEVRDQSGQLDISQSTIPRSFDGKLVQVSRAIIYNTVDGPKNLGSISVYYPALGLFSGLKQEEVVFISIFIFAVLAVF
GTALIGNRFFVIQPLMRLTAAIEATRQLGSRHHVDWQSNDEMGRLARSFNEMQTKLESEEKELKFAHRRATDIYNLTPAM
LFSLDEEDRITAVSDYWLLATGYNRAAVIGRNFADLVTSTTRDKFKRRQAESGIAVTVKFVCLDGRTMDVLIMESEAEAG
AHDRLSLSVMTDVTELKASEDRNHRQAITDHLTGLLNRQGFEAVLDNKIAAADAAGQELACLFVDLDRFKWINDNMGHAA
GDMALIELVERLKTYLAPSDEAARLGGDEFAILLPAKDAEKRARMMCEQIASIFETPFAPDMHLSASVGIAIYPHHAATA
AELLQKSDLAMYAKKRDGKNGAQLFDNAMLDRARSRAEIEANIESGLVDNWFEAFLQPIVNLNGRGIAGFEALMRLNHPQ
KGLMPPAEIISVAEETGKIVRVGNVIMEKAIANLAKISRISGMQDSYLAINFSPLQFEPALPARLAAIVGRHGIHPERIV
VEITEAVLMHDNPQIRMIVTELRRFGCRIALDDFGTGYSSLSYLNRFPVDIIKIDQSFTRAINDGDDDVRQKSRMLIEGI
TTLSHKMNCTVIAEGIETEEECRTLHQMGLDYGQGYLFHRPKHAAVLIEELMASEAAVARAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=515, Percent_Identity=30.0970873786408, Blast_Score=221, Evalue=1e-58,
Organism=Escherichia coli, GI87081921, Length=464, Percent_Identity=29.0948275862069, Blast_Score=186, Evalue=3e-48,
Organism=Escherichia coli, GI226510982, Length=407, Percent_Identity=28.009828009828, Blast_Score=160, Evalue=3e-40,
Organism=Escherichia coli, GI1787055, Length=328, Percent_Identity=30.4878048780488, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI1790496, Length=245, Percent_Identity=32.2448979591837, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI1786507, Length=252, Percent_Identity=31.3492063492063, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI87082096, Length=434, Percent_Identity=27.1889400921659, Blast_Score=123, Evalue=4e-29,
Organism=Escherichia coli, GI87081980, Length=271, Percent_Identity=32.4723247232472, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI1788502, Length=231, Percent_Identity=31.1688311688312, Blast_Score=120, Evalue=5e-28,
Organism=Escherichia coli, GI87081743, Length=229, Percent_Identity=34.9344978165939, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI1788849, Length=373, Percent_Identity=25.4691689008043, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI87081845, Length=256, Percent_Identity=30.078125, Blast_Score=112, Evalue=1e-25,
Organism=Escherichia coli, GI1788381, Length=185, Percent_Identity=37.2972972972973, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1788956, Length=157, Percent_Identity=38.8535031847134, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI1786584, Length=171, Percent_Identity=32.7485380116959, Blast_Score=97, Evalue=6e-21,
Organism=Escherichia coli, GI87081881, Length=181, Percent_Identity=34.2541436464088, Blast_Score=93, Evalue=6e-20,
Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=34.5454545454545, Blast_Score=88, Evalue=3e-18,
Organism=Escherichia coli, GI1787262, Length=179, Percent_Identity=29.608938547486, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI87081977, Length=155, Percent_Identity=34.8387096774194, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87081974, Length=153, Percent_Identity=31.3725490196078, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787410, Length=229, Percent_Identity=27.0742358078603, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1787056, Length=162, Percent_Identity=32.7160493827161, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1787802, Length=160, Percent_Identity=30, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787816, Length=161, Percent_Identity=27.3291925465839, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI87082007, Length=170, Percent_Identity=30, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 86650; Mature: 86650

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: PS50885 HAMP ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNSVENRFFGIVCGALLVFVAPLFVLFLFLSSERADKEIRDHISVLLVANAQALAKPLW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHEEEEECHHHHHHHHH
DLDEESVTQISATVVSQGAIVKVEVRDQSGQLDISQSTIPRSFDGKLVQVSRAIIYNTVD
CCCHHHHHHHHHHHHCCCCEEEEEEECCCCCEEECCCCCCCCCCCCHHEEEHHHHEECCC
GPKNLGSISVYYPALGLFSGLKQEEVVFISIFIFAVLAVFGTALIGNRFFVIQPLMRLTA
CCCCCCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
AIEATRQLGSRHHVDWQSNDEMGRLARSFNEMQTKLESEEKELKFAHRRATDIYNLTPAM
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
LFSLDEEDRITAVSDYWLLATGYNRAAVIGRNFADLVTSTTRDKFKRRQAESGIAVTVKF
HEECCCCCCEEEEECEEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
VCLDGRTMDVLIMESEAEAGAHDRLSLSVMTDVTELKASEDRNHRQAITDHLTGLLNRQG
EEECCCEEEEEEEECCCCCCCCCCEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
FEAVLDNKIAAADAAGQELACLFVDLDRFKWINDNMGHAAGDMALIELVERLKTYLAPSD
HHHHHCCCHHHCCCCCCCEEEEEEEHHHHEECCCCCCCCHHHHHHHHHHHHHHHHCCCCC
EAARLGGDEFAILLPAKDAEKRARMMCEQIASIFETPFAPDMHLSASVGIAIYPHHAATA
HHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCHHHHH
AELLQKSDLAMYAKKRDGKNGAQLFDNAMLDRARSRAEIEANIESGLVDNWFEAFLQPIV
HHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEECHHCCHHHHHHHHHHHHHH
NLNGRGIAGFEALMRLNHPQKGLMPPAEIISVAEETGKIVRVGNVIMEKAIANLAKISRI
CCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHH
SGMQDSYLAINFSPLQFEPALPARLAAIVGRHGIHPERIVVEITEAVLMHDNPQIRMIVT
CCCCCCEEEEEECCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEHHHH
ELRRFGCRIALDDFGTGYSSLSYLNRFPVDIIKIDQSFTRAINDGDDDVRQKSRMLIEGI
HHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHHHCCCCHHHHHHHHHHHHHH
TTLSHKMNCTVIAEGIETEEECRTLHQMGLDYGQGYLFHRPKHAAVLIEELMASEAAVAR
HHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHC
AS
CC
>Mature Secondary Structure
MNNSVENRFFGIVCGALLVFVAPLFVLFLFLSSERADKEIRDHISVLLVANAQALAKPLW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHEEEEECHHHHHHHHH
DLDEESVTQISATVVSQGAIVKVEVRDQSGQLDISQSTIPRSFDGKLVQVSRAIIYNTVD
CCCHHHHHHHHHHHHCCCCEEEEEEECCCCCEEECCCCCCCCCCCCHHEEEHHHHEECCC
GPKNLGSISVYYPALGLFSGLKQEEVVFISIFIFAVLAVFGTALIGNRFFVIQPLMRLTA
CCCCCCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
AIEATRQLGSRHHVDWQSNDEMGRLARSFNEMQTKLESEEKELKFAHRRATDIYNLTPAM
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
LFSLDEEDRITAVSDYWLLATGYNRAAVIGRNFADLVTSTTRDKFKRRQAESGIAVTVKF
HEECCCCCCEEEEECEEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
VCLDGRTMDVLIMESEAEAGAHDRLSLSVMTDVTELKASEDRNHRQAITDHLTGLLNRQG
EEECCCEEEEEEEECCCCCCCCCCEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
FEAVLDNKIAAADAAGQELACLFVDLDRFKWINDNMGHAAGDMALIELVERLKTYLAPSD
HHHHHCCCHHHCCCCCCCEEEEEEEHHHHEECCCCCCCCHHHHHHHHHHHHHHHHCCCCC
EAARLGGDEFAILLPAKDAEKRARMMCEQIASIFETPFAPDMHLSASVGIAIYPHHAATA
HHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCHHHHH
AELLQKSDLAMYAKKRDGKNGAQLFDNAMLDRARSRAEIEANIESGLVDNWFEAFLQPIV
HHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEECHHCCHHHHHHHHHHHHHH
NLNGRGIAGFEALMRLNHPQKGLMPPAEIISVAEETGKIVRVGNVIMEKAIANLAKISRI
CCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHH
SGMQDSYLAINFSPLQFEPALPARLAAIVGRHGIHPERIVVEITEAVLMHDNPQIRMIVT
CCCCCCEEEEEECCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEHHHH
ELRRFGCRIALDDFGTGYSSLSYLNRFPVDIIKIDQSFTRAINDGDDDVRQKSRMLIEGI
HHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHHHCCCCHHHHHHHHHHHHHH
TTLSHKMNCTVIAEGIETEEECRTLHQMGLDYGQGYLFHRPKHAAVLIEELMASEAAVAR
HHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHC
AS
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]