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The map label for this gene is yfdE [H]

Identifier: 209550204

GI number: 209550204

Start: 2668292

End: 2669491

Strand: Direct

Name: yfdE [H]

Synonym: Rleg2_2624

Alternate gene names: 209550204

Gene position: 2668292-2669491 (Clockwise)

Preceding gene: 209550203

Following gene: 209550205

Centisome position: 58.8

GC content: 63.75

Gene sequence:

>1200_bases
ATGACGCAGACCACGAAAAAGCCGCCGCTTGCCGGCATCCGGGTGATCGAGCTGGCCCGCGTGCTGGCCGGCCCCTGGGC
TGGACAGATGCTCGCCGATCTCGGCGCCGATGTCATCAAGGTCGAAAATCCCGACGGCGGCGACGATACCCGCCAATGGG
GGCCGCCCTTCGTCGAAGGTGCCGATGGCGAAAATCTCTCGGCCGCCTATTACCACGCCGCCAATCGCGGCAAACGCTCC
GTCACCGCCGATCTGAAGAGCCCGGAAGGCCAGGATCTCGTCCGCCGCCTGGTTGCGTCAGCCGATGTGGTGATCGAGAA
CTTCAAGCTCGGCGGCCTCGTCAAATACGGTCTCGATTACGACAGCCTGCGCAAGGTCAACCCGAAGCTCGTCTATTGCT
CGATCACCGGCTTCGGCCAGACCGGTCCCTATGCCAGCCTCGCCGGTTATGATTACATCGTCCAGGGCATGTCCGGCTTC
ATGTCGATCACCGGCGAGCCGGACGGCCAGCCGATGAAGGCCGGCGTCGCCATCGCCGATATCTTCACCGGCATCTATGC
CGTCTCGGCAATCGAAGCCGCCCTGATCCATGCGCTCAAATCAGGCGAAGGCCAGCTCGTCGACATGGCCCTGCTCGACG
TGCAATCGGCCGCGCTCGCCAATCAGAACATGAATTATCTGATCTCCGGGGCGGCACCCACCCGCCTCGGTAACGCCCAC
CCGAATATCTCGCCCTATGAGGTCGTACCGGCGGCGGACGGTTATCTCATCCTCGCGGTCGGAAACGACGGCCAATTCCG
CCGTCTCTGCGCCATCCTCGGCCTGGAGACGATCGCCGGCGACGAGCGTTTCGCCACCAACAAGGCCCGCGTCGCCAATC
GCGGCGAGGTACGCCGTCTCGTTTCCACCGAGACGCTGAAATGGCAGAAGGCGGATCTGTTGAAGGCCTGCGAGGCGAAT
GGGGTTCCCGCCGGCCCGATCAATACGATCGAGGAAATGTTCGCCGATCCGCAGGTAGAAGCTCGCGGCCTGCGCATCGA
CCTTGCCGATGCCGCCGGTACCGTCATACCGGGGGTCAGGACGCCGGTGGTGCTGTCGGAAACGCCGTTGTCTTACAGCA
GGCCGAGCCCGCGTCTCGGCGAACACACCGAAGAAATTCTGGCGGAACTCGCCGAGCGCGAGAGGAAGGCATCGTCATGA

Upstream 100 bases:

>100_bases
TCGGGCTTGTACATCCTCTGGCGCGAGCGCCGCTTTGCTTCAAAGCCCGTATCCGATACATCTGAGGCGACGCTGGCGCC
GTAAAGACCGACGAGGGAAT

Downstream 100 bases:

>100_bases
AGAAGGTATTGTCATGAAAAGAACGGGCGGGCAACTCATCGTCGAGGCGCTGAAGGCGAACGGCGTCAAGCGTCTCTCCT
GCGTGCCGGGCGAGAGTTTC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 398

Protein sequence:

>399_residues
MTQTTKKPPLAGIRVIELARVLAGPWAGQMLADLGADVIKVENPDGGDDTRQWGPPFVEGADGENLSAAYYHAANRGKRS
VTADLKSPEGQDLVRRLVASADVVIENFKLGGLVKYGLDYDSLRKVNPKLVYCSITGFGQTGPYASLAGYDYIVQGMSGF
MSITGEPDGQPMKAGVAIADIFTGIYAVSAIEAALIHALKSGEGQLVDMALLDVQSAALANQNMNYLISGAAPTRLGNAH
PNISPYEVVPAADGYLILAVGNDGQFRRLCAILGLETIAGDERFATNKARVANRGEVRRLVSTETLKWQKADLLKACEAN
GVPAGPINTIEEMFADPQVEARGLRIDLADAAGTVIPGVRTPVVLSETPLSYSRPSPRLGEHTEEILAELAERERKASS

Sequences:

>Translated_399_residues
MTQTTKKPPLAGIRVIELARVLAGPWAGQMLADLGADVIKVENPDGGDDTRQWGPPFVEGADGENLSAAYYHAANRGKRS
VTADLKSPEGQDLVRRLVASADVVIENFKLGGLVKYGLDYDSLRKVNPKLVYCSITGFGQTGPYASLAGYDYIVQGMSGF
MSITGEPDGQPMKAGVAIADIFTGIYAVSAIEAALIHALKSGEGQLVDMALLDVQSAALANQNMNYLISGAAPTRLGNAH
PNISPYEVVPAADGYLILAVGNDGQFRRLCAILGLETIAGDERFATNKARVANRGEVRRLVSTETLKWQKADLLKACEAN
GVPAGPINTIEEMFADPQVEARGLRIDLADAAGTVIPGVRTPVVLSETPLSYSRPSPRLGEHTEEILAELAERERKASS
>Mature_398_residues
TQTTKKPPLAGIRVIELARVLAGPWAGQMLADLGADVIKVENPDGGDDTRQWGPPFVEGADGENLSAAYYHAANRGKRSV
TADLKSPEGQDLVRRLVASADVVIENFKLGGLVKYGLDYDSLRKVNPKLVYCSITGFGQTGPYASLAGYDYIVQGMSGFM
SITGEPDGQPMKAGVAIADIFTGIYAVSAIEAALIHALKSGEGQLVDMALLDVQSAALANQNMNYLISGAAPTRLGNAHP
NISPYEVVPAADGYLILAVGNDGQFRRLCAILGLETIAGDERFATNKARVANRGEVRRLVSTETLKWQKADLLKACEANG
VPAGPINTIEEMFADPQVEARGLRIDLADAAGTVIPGVRTPVVLSETPLSYSRPSPRLGEHTEEILAELAERERKASS

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=391, Percent_Identity=41.4322250639386, Blast_Score=317, Evalue=2e-86,
Organism=Homo sapiens, GI300863124, Length=415, Percent_Identity=38.7951807228916, Blast_Score=304, Evalue=9e-83,
Organism=Homo sapiens, GI13376042, Length=415, Percent_Identity=36.144578313253, Blast_Score=263, Evalue=3e-70,
Organism=Homo sapiens, GI300863126, Length=391, Percent_Identity=35.8056265984655, Blast_Score=253, Evalue=3e-67,
Organism=Homo sapiens, GI42794625, Length=386, Percent_Identity=27.720207253886, Blast_Score=132, Evalue=6e-31,
Organism=Homo sapiens, GI266456254, Length=386, Percent_Identity=27.720207253886, Blast_Score=132, Evalue=6e-31,
Organism=Homo sapiens, GI266458393, Length=265, Percent_Identity=29.4339622641509, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI266458397, Length=205, Percent_Identity=32.6829268292683, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI266458395, Length=150, Percent_Identity=36, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI42822893, Length=150, Percent_Identity=36, Blast_Score=97, Evalue=3e-20,
Organism=Escherichia coli, GI87082093, Length=393, Percent_Identity=37.6590330788804, Blast_Score=263, Evalue=1e-71,
Organism=Escherichia coli, GI1788717, Length=413, Percent_Identity=27.6029055690073, Blast_Score=158, Evalue=6e-40,
Organism=Escherichia coli, GI1786222, Length=396, Percent_Identity=27.020202020202, Blast_Score=113, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI32564160, Length=207, Percent_Identity=30.4347826086957, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI115535051, Length=207, Percent_Identity=30.9178743961353, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24648431, Length=385, Percent_Identity=43.8961038961039, Blast_Score=316, Evalue=2e-86,
Organism=Drosophila melanogaster, GI24585488, Length=211, Percent_Identity=33.6492890995261, Blast_Score=108, Evalue=5e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42446; Mature: 42315

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQTTKKPPLAGIRVIELARVLAGPWAGQMLADLGADVIKVENPDGGDDTRQWGPPFVEG
CCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCC
ADGENLSAAYYHAANRGKRSVTADLKSPEGQDLVRRLVASADVVIENFKLGGLVKYGLDY
CCCCCCCHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHEECCCCCCEEEECCCH
DSLRKVNPKLVYCSITGFGQTGPYASLAGYDYIVQGMSGFMSITGEPDGQPMKAGVAIAD
HHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCHHHCCHHHH
IFTGIYAVSAIEAALIHALKSGEGQLVDMALLDVQSAALANQNMNYLISGAAPTRLGNAH
HHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCC
PNISPYEVVPAADGYLILAVGNDGQFRRLCAILGLETIAGDERFATNKARVANRGEVRRL
CCCCCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCHHCCCHHHHCCCHHHHHH
VSTETLKWQKADLLKACEANGVPAGPINTIEEMFADPQVEARGLRIDLADAAGTVIPGVR
HHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEECCCEEEEECCCCCCCCCCCC
TPVVLSETPLSYSRPSPRLGEHTEEILAELAERERKASS
CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TQTTKKPPLAGIRVIELARVLAGPWAGQMLADLGADVIKVENPDGGDDTRQWGPPFVEG
CCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCC
ADGENLSAAYYHAANRGKRSVTADLKSPEGQDLVRRLVASADVVIENFKLGGLVKYGLDY
CCCCCCCHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHEECCCCCCEEEECCCH
DSLRKVNPKLVYCSITGFGQTGPYASLAGYDYIVQGMSGFMSITGEPDGQPMKAGVAIAD
HHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCHHHCCHHHH
IFTGIYAVSAIEAALIHALKSGEGQLVDMALLDVQSAALANQNMNYLISGAAPTRLGNAH
HHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCC
PNISPYEVVPAADGYLILAVGNDGQFRRLCAILGLETIAGDERFATNKARVANRGEVRRL
CCCCCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCHHCCCHHHHCCCHHHHHH
VSTETLKWQKADLLKACEANGVPAGPINTIEEMFADPQVEARGLRIDLADAAGTVIPGVR
HHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEECCCEEEEECCCCCCCCCCCC
TPVVLSETPLSYSRPSPRLGEHTEEILAELAERERKASS
CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]