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The map label for this gene is ycfQ [H]

Identifier: 209550091

GI number: 209550091

Start: 2542177

End: 2542797

Strand: Direct

Name: ycfQ [H]

Synonym: Rleg2_2508

Alternate gene names: 209550091

Gene position: 2542177-2542797 (Clockwise)

Preceding gene: 209550090

Following gene: 209550092

Centisome position: 56.02

GC content: 66.18

Gene sequence:

>621_bases
ATGAACGCAACAACCCTCGATCATGAGAAGACCCGCAGCCGCGGCCGTCCGCGGGAATTCGACGCCGACGCGGCCCTCGA
CGCGGCGCTACGCGTCTTTTCCGAGCGCGGCTACCATGCTGCCTCGATCAGCGAACTCACCGAGGCCATGGGGCTTGCCG
CCGGCAGCGTCTACAAGGCCTTCGGCGACAAGCGCGGCATCTTCCTTGCCGCCTTCGACCGCTACCGCGCCGTGCGTCGC
GGCCTGCTCGATGCCAGGCTGGCACGTGCCGAGACCGGCCGCGATAAGCTCCATGCGCTCATCACCTTCTTTGCCGGCTC
TTCGCACGGTGAAATCGGCCGGCAGGGCTGCCTCGTCGTCGGCAGCGCCGGCGATCTCGCCCTCTTCGACGAAGAGGCGG
CCGAACGTGTCGCCACCGCCTTCATCACAGACGAGACGCTTCTCGCCGACCTCATCCGCCTCGGCCAGTCCGACGGCTCG
ATTTCGGCGGATATCGATGTATCGGCGGTAGCACTTGCGCTTCTCTGCCTCACCAAGGGCATGCGCGTCATCGGCAAGAC
GGAACGCAGCGGCGAAGAAATGGCTGCCGCTGCCGAAGCCGCGATGAAGCTGGTGACCTGA

Upstream 100 bases:

>100_bases
CCCGGAAGCGAATGGCCAGAACTGGCTTCTCACACTCTGATTTGCTGCGTCGCAAAAATTTCGCTTGATTTGGAAACGAT
CATTTCCTAATTAGGCAAGC

Downstream 100 bases:

>100_bases
CATTTTCCCCAGGGGAATGCCAGCATTCCCCTGCGCGCCCTGAAACGGGTGGCCGCCGGCAGACCGATTTGCGATTAATC
CATTCAATCATACCGGAGTT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MNATTLDHEKTRSRGRPREFDADAALDAALRVFSERGYHAASISELTEAMGLAAGSVYKAFGDKRGIFLAAFDRYRAVRR
GLLDARLARAETGRDKLHALITFFAGSSHGEIGRQGCLVVGSAGDLALFDEEAAERVATAFITDETLLADLIRLGQSDGS
ISADIDVSAVALALLCLTKGMRVIGKTERSGEEMAAAAEAAMKLVT

Sequences:

>Translated_206_residues
MNATTLDHEKTRSRGRPREFDADAALDAALRVFSERGYHAASISELTEAMGLAAGSVYKAFGDKRGIFLAAFDRYRAVRR
GLLDARLARAETGRDKLHALITFFAGSSHGEIGRQGCLVVGSAGDLALFDEEAAERVATAFITDETLLADLIRLGQSDGS
ISADIDVSAVALALLCLTKGMRVIGKTERSGEEMAAAAEAAMKLVT
>Mature_206_residues
MNATTLDHEKTRSRGRPREFDADAALDAALRVFSERGYHAASISELTEAMGLAAGSVYKAFGDKRGIFLAAFDRYRAVRR
GLLDARLARAETGRDKLHALITFFAGSSHGEIGRQGCLVVGSAGDLALFDEEAAERVATAFITDETLLADLIRLGQSDGS
ISADIDVSAVALALLCLTKGMRVIGKTERSGEEMAAAAEAAMKLVT

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=196, Percent_Identity=30.1020408163265, Blast_Score=90, Evalue=1e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21910; Mature: 21910

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNATTLDHEKTRSRGRPREFDADAALDAALRVFSERGYHAASISELTEAMGLAAGSVYKA
CCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGDKRGIFLAAFDRYRAVRRGLLDARLARAETGRDKLHALITFFAGSSHGEIGRQGCLVV
HCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEE
GSAGDLALFDEEAAERVATAFITDETLLADLIRLGQSDGSISADIDVSAVALALLCLTKG
ECCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHC
MRVIGKTERSGEEMAAAAEAAMKLVT
HHHHCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNATTLDHEKTRSRGRPREFDADAALDAALRVFSERGYHAASISELTEAMGLAAGSVYKA
CCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGDKRGIFLAAFDRYRAVRRGLLDARLARAETGRDKLHALITFFAGSSHGEIGRQGCLVV
HCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEE
GSAGDLALFDEEAAERVATAFITDETLLADLIRLGQSDGSISADIDVSAVALALLCLTKG
ECCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHC
MRVIGKTERSGEEMAAAAEAAMKLVT
HHHHCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]