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The map label for this gene is 209549939

Identifier: 209549939

GI number: 209549939

Start: 2416412

End: 2417335

Strand: Direct

Name: 209549939

Synonym: Rleg2_2355

Alternate gene names: NA

Gene position: 2416412-2417335 (Clockwise)

Preceding gene: 209549937

Following gene: 209549940

Centisome position: 53.25

GC content: 62.34

Gene sequence:

>924_bases
ATGTCGATTGCCGCTGAAGCCATGCAGATCAGAACACCGGAATTTTCCCTGACCGCCCACGGCAAAACCTTGGCTGCGGA
GCGGATCGGCTGGCTCACACCGACCGATCCCGCCATCGGCGTCGACGCCATCCGCCGCCGCTACCAGAACGACGGCTATG
TCTGGCTGAAAGGTCTTCTGCCGCGGGCCGATGTCATCGATTTCCGTGGCTGGGTGTTCGAACGCTTCGCGGTGACAGGA
CTGGTCGAGCCCGGCAGCGATTTTTCGCAAGGGATTGCGTCGGCAGCCAGCTTCGACTGGAGCCTGGCGGACCGGCGGCT
GATGTCGCTTGTCCGCTCCGCCGCCTATGAAGGTTTTTGCGCGCAGCCGCCGCTCACCCGCTTCATGGATGATTTCCTGC
AGGGCATCTCCTATCTGCACAAGCGCAAGATCATGCGTTTCACCAAGCCGGGAACGCCGACGGCCACGCCCGCTCACTAC
GATCTCGTCTATCTCCGCGGCGGCACCAGTCGCCTGGTGACGGCGTGGATCCCGATCGGCGACATCCCTGCCGAGATGGG
CGGCCTCGTCTACCTCGAAGGTTCGCACGCGCTTGGAGTCAAGATGGAGGCGAAGTTCGAGGCCGCAAGCGGCGATCTTT
CTCCTGAAGAGCGGATCAGCGCCTATAACAGTCACATGACGGAAGGCGGCTGGGTGTCGAAAGATCTTCCCGATATGGCC
GAGCGCTTCGACACCCGCTGGCTCGCCGCCGATTATGAGGCCGGCGACGTTGTGCTGCACTCGCCCTACATGATCCACGC
CTCGACCACCAACCAGGACAGCAGCCGGCGGCTGCGCCTCTCCACCGACATCAGATATCAGAATGTCGACGACGAGATCG
ACGCCCGATGGAACAACCATTGGAGCCTCGGCGATATGCTGTAG

Upstream 100 bases:

>100_bases
CATGGTGAGCGAAAAGTCCAGCTACCAGTTTCCTCTATGTCGGTTAGTCCTGCAGATCAGATAATTAAAGGCAACTCAAT
TCAAGCTGGGGAAGGCTGAA

Downstream 100 bases:

>100_bases
CCCGGCTTCAGCGCCCCAGCGGCGAAGTGTCGGGACCTTACTGCCGCCGTGAGCGTTGATGGTCCAAGTCTTGAATCGGT
TGCATGACTGACCGACTTAT

Product: phytanoyl-CoA dioxygenase

Products: NA

Alternate protein names: Oxidoreductase; Dioxygenase Protein; Dehydrogenase; Phytanoyl-CoA Dioxygenase Family Protein

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MSIAAEAMQIRTPEFSLTAHGKTLAAERIGWLTPTDPAIGVDAIRRRYQNDGYVWLKGLLPRADVIDFRGWVFERFAVTG
LVEPGSDFSQGIASAASFDWSLADRRLMSLVRSAAYEGFCAQPPLTRFMDDFLQGISYLHKRKIMRFTKPGTPTATPAHY
DLVYLRGGTSRLVTAWIPIGDIPAEMGGLVYLEGSHALGVKMEAKFEAASGDLSPEERISAYNSHMTEGGWVSKDLPDMA
ERFDTRWLAADYEAGDVVLHSPYMIHASTTNQDSSRRLRLSTDIRYQNVDDEIDARWNNHWSLGDML

Sequences:

>Translated_307_residues
MSIAAEAMQIRTPEFSLTAHGKTLAAERIGWLTPTDPAIGVDAIRRRYQNDGYVWLKGLLPRADVIDFRGWVFERFAVTG
LVEPGSDFSQGIASAASFDWSLADRRLMSLVRSAAYEGFCAQPPLTRFMDDFLQGISYLHKRKIMRFTKPGTPTATPAHY
DLVYLRGGTSRLVTAWIPIGDIPAEMGGLVYLEGSHALGVKMEAKFEAASGDLSPEERISAYNSHMTEGGWVSKDLPDMA
ERFDTRWLAADYEAGDVVLHSPYMIHASTTNQDSSRRLRLSTDIRYQNVDDEIDARWNNHWSLGDML
>Mature_306_residues
SIAAEAMQIRTPEFSLTAHGKTLAAERIGWLTPTDPAIGVDAIRRRYQNDGYVWLKGLLPRADVIDFRGWVFERFAVTGL
VEPGSDFSQGIASAASFDWSLADRRLMSLVRSAAYEGFCAQPPLTRFMDDFLQGISYLHKRKIMRFTKPGTPTATPAHYD
LVYLRGGTSRLVTAWIPIGDIPAEMGGLVYLEGSHALGVKMEAKFEAASGDLSPEERISAYNSHMTEGGWVSKDLPDMAE
RFDTRWLAADYEAGDVVLHSPYMIHASTTNQDSSRRLRLSTDIRYQNVDDEIDARWNNHWSLGDML

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34358; Mature: 34227

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIAAEAMQIRTPEFSLTAHGKTLAAERIGWLTPTDPAIGVDAIRRRYQNDGYVWLKGLL
CCCCCCHHHCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECC
PRADVIDFRGWVFERFAVTGLVEPGSDFSQGIASAASFDWSLADRRLMSLVRSAAYEGFC
CCCHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
AQPPLTRFMDDFLQGISYLHKRKIMRFTKPGTPTATPAHYDLVYLRGGTSRLVTAWIPIG
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCC
DIPAEMGGLVYLEGSHALGVKMEAKFEAASGDLSPEERISAYNSHMTEGGWVSKDLPDMA
CCCHHHCCEEEEECCCEEEEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHH
ERFDTRWLAADYEAGDVVLHSPYMIHASTTNQDSSRRLRLSTDIRYQNVDDEIDARWNNH
HHHCCEEEEECCCCCCEEEECCEEEEEECCCCCCCCEEEEEECEEECCCCCHHCCCCCCC
WSLGDML
CCCCCCC
>Mature Secondary Structure 
SIAAEAMQIRTPEFSLTAHGKTLAAERIGWLTPTDPAIGVDAIRRRYQNDGYVWLKGLL
CCCCCHHHCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECC
PRADVIDFRGWVFERFAVTGLVEPGSDFSQGIASAASFDWSLADRRLMSLVRSAAYEGFC
CCCHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
AQPPLTRFMDDFLQGISYLHKRKIMRFTKPGTPTATPAHYDLVYLRGGTSRLVTAWIPIG
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCC
DIPAEMGGLVYLEGSHALGVKMEAKFEAASGDLSPEERISAYNSHMTEGGWVSKDLPDMA
CCCHHHCCEEEEECCCEEEEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHH
ERFDTRWLAADYEAGDVVLHSPYMIHASTTNQDSSRRLRLSTDIRYQNVDDEIDARWNNH
HHHCCEEEEECCCCCCEEEECCEEEEEECCCCCCCCEEEEEECEEECCCCCHHCCCCCCC
WSLGDML
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA