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The map label for this gene is ydcR [H]

Identifier: 209549919

GI number: 209549919

Start: 2395313

End: 2396725

Strand: Direct

Name: ydcR [H]

Synonym: Rleg2_2335

Alternate gene names: 209549919

Gene position: 2395313-2396725 (Clockwise)

Preceding gene: 209549917

Following gene: 209549922

Centisome position: 52.78

GC content: 63.62

Gene sequence:

>1413_bases
ATGGTGCAGAAAGCAGTACGGATGAACGAAGGACGCACACGGGTGGAGATGGTCGTCTCAACGATCAGGCAGCGCATTGC
CGGCCGCAGCCTGACGCCCGGCGCAAGATTGCCTTCCGTCCGAGGTCTGGCCGCGACATTGAAGCTGTCAACTTCGACTG
TGGTGGATGCCTATGAGCGTCTCGTCGCCGAAGGGGCGATCCTCGCAAGGCCGGGCTCGGGATTTTACGTCGCCAACCAG
GCCGCCCCCTTTGCGCTCGCCGAGGCCGGGCCGAAGCTCGACCGCGCCGTCGATCCCTTCTGGATATCCCGGCAATCGCT
GGAGGCTGATGAAACCGATCTGAAGCCCGGCTGCGGCTGGCTGCCGCCTTCCTGGCTGCCAGGGGAAGGCATACGCCGCG
GGTTGAGAACCCTTGCCCGCGCCGATCAGCCGGCGCTTGCCGAGTACGGCTCGCCGCTCGGCCTGCCGCCATTGCGCCAG
CTGATTTCGCGGCGCATGGGCGAACGCGGCATCGAAGCCTCTCCCGATCAGATCATGCTCGCCGATTCCGGCACGCAGGC
GATCGATCTGCTCTGCCGCTTCCTGCTGGAACCCAGCGACACGGTGCTGGTCGACGACCCCTGCTATTTCAATTTCCATG
CGCTGCTGCGCGCCCACCGCGCAAAGATCGTCGGCGTCCCCTATACGCCCTCCGGTCCCGATATCGAGCTGTTTGCCCAA
GTCGTCGCCGAACATCGGCCGCGGCTCTACATCACCAACTCCGCCATCCACAATCCGACTGGTGCAACGCTTTCCCCGGT
GACGGCCCATCGGCTTCTGAAACTCGCCGATCAGTTCGACCTCACCATCATCGAGGACGATATCTTCGCCGATTTCGAAT
ATACGCCGGCGCCGCGCCTCGCCGCTTTCGACGGCCTCGATCGGGTCATCCACATCGGCAGCTTTTCGAAGACCCTGTCG
GCCTCGGCCCGCTGCGGCTTCGTCGCTGCCAAACCGGAATGGATCGATGGCCTGACCGACCTCAAGATCGCCACCTCCTT
CGGCGGCGGCCGGTTGACGGCGGAACTGGTGCTGAACGTCTTGAGCGACGGCAGCTATCGGAAACACACGGAAATGCTGA
GACAACGGCTCTCCCGGGCGATGAGCGAGGTCTCGGCCAAGCTGAAGGGCCTGGGGATAACGCCCTGGCTGGAGCCTCAG
GCCGGTATGTTCCTCTGGTGCCGCCTGCCGAACGGTATCGATGCGGCTGATGTGGCCCGCGCCGCGCTGGAAAGGAAGAT
CGTGCTGGCCCCCGGCAACGCTTTCAGCTTGTCACAATCGGCAACGAATTTCATGCGGTTCAATGTGTCGCAGATGTTGG
ATGCAAGAGTGTTCGAGGTGCTGGGGGATGTGTTGGGGAGGCAGGGGACGTGA

Upstream 100 bases:

>100_bases
CGGTCCATGATGCGTCGCACTCCTTCTTTGCTGTTTGCCGTTATCGGCCATGATGGATGGTCACGACAGTGACAGTCTGA
TACGATTTCGCGAAACTGTT

Downstream 100 bases:

>100_bases
GAGACCGAGCCAGTTGCGGCGAGCCTTATTGCGGGCGCGGCATCCTCCAACCTCCCTCATCCTGAGGTGCCCCGTAGGGG
CCTCGAAGGACATGCTCAAC

Product: GntR family transcriptional regulator with aminotransferase domain

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 470; Mature: 470

Protein sequence:

>470_residues
MVQKAVRMNEGRTRVEMVVSTIRQRIAGRSLTPGARLPSVRGLAATLKLSTSTVVDAYERLVAEGAILARPGSGFYVANQ
AAPFALAEAGPKLDRAVDPFWISRQSLEADETDLKPGCGWLPPSWLPGEGIRRGLRTLARADQPALAEYGSPLGLPPLRQ
LISRRMGERGIEASPDQIMLADSGTQAIDLLCRFLLEPSDTVLVDDPCYFNFHALLRAHRAKIVGVPYTPSGPDIELFAQ
VVAEHRPRLYITNSAIHNPTGATLSPVTAHRLLKLADQFDLTIIEDDIFADFEYTPAPRLAAFDGLDRVIHIGSFSKTLS
ASARCGFVAAKPEWIDGLTDLKIATSFGGGRLTAELVLNVLSDGSYRKHTEMLRQRLSRAMSEVSAKLKGLGITPWLEPQ
AGMFLWCRLPNGIDAADVARAALERKIVLAPGNAFSLSQSATNFMRFNVSQMLDARVFEVLGDVLGRQGT

Sequences:

>Translated_470_residues
MVQKAVRMNEGRTRVEMVVSTIRQRIAGRSLTPGARLPSVRGLAATLKLSTSTVVDAYERLVAEGAILARPGSGFYVANQ
AAPFALAEAGPKLDRAVDPFWISRQSLEADETDLKPGCGWLPPSWLPGEGIRRGLRTLARADQPALAEYGSPLGLPPLRQ
LISRRMGERGIEASPDQIMLADSGTQAIDLLCRFLLEPSDTVLVDDPCYFNFHALLRAHRAKIVGVPYTPSGPDIELFAQ
VVAEHRPRLYITNSAIHNPTGATLSPVTAHRLLKLADQFDLTIIEDDIFADFEYTPAPRLAAFDGLDRVIHIGSFSKTLS
ASARCGFVAAKPEWIDGLTDLKIATSFGGGRLTAELVLNVLSDGSYRKHTEMLRQRLSRAMSEVSAKLKGLGITPWLEPQ
AGMFLWCRLPNGIDAADVARAALERKIVLAPGNAFSLSQSATNFMRFNVSQMLDARVFEVLGDVLGRQGT
>Mature_470_residues
MVQKAVRMNEGRTRVEMVVSTIRQRIAGRSLTPGARLPSVRGLAATLKLSTSTVVDAYERLVAEGAILARPGSGFYVANQ
AAPFALAEAGPKLDRAVDPFWISRQSLEADETDLKPGCGWLPPSWLPGEGIRRGLRTLARADQPALAEYGSPLGLPPLRQ
LISRRMGERGIEASPDQIMLADSGTQAIDLLCRFLLEPSDTVLVDDPCYFNFHALLRAHRAKIVGVPYTPSGPDIELFAQ
VVAEHRPRLYITNSAIHNPTGATLSPVTAHRLLKLADQFDLTIIEDDIFADFEYTPAPRLAAFDGLDRVIHIGSFSKTLS
ASARCGFVAAKPEWIDGLTDLKIATSFGGGRLTAELVLNVLSDGSYRKHTEMLRQRLSRAMSEVSAKLKGLGITPWLEPQ
AGMFLWCRLPNGIDAADVARAALERKIVLAPGNAFSLSQSATNFMRFNVSQMLDARVFEVLGDVLGRQGT

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=370, Percent_Identity=25.6756756756757, Blast_Score=89, Evalue=1e-17,
Organism=Homo sapiens, GI33469970, Length=370, Percent_Identity=25.6756756756757, Blast_Score=89, Evalue=1e-17,
Organism=Escherichia coli, GI1787710, Length=448, Percent_Identity=31.25, Blast_Score=185, Evalue=7e-48,
Organism=Escherichia coli, GI1790797, Length=469, Percent_Identity=27.2921108742004, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1788722, Length=310, Percent_Identity=23.2258064516129, Blast_Score=62, Evalue=5e-11,
Organism=Drosophila melanogaster, GI21356535, Length=364, Percent_Identity=24.1758241758242, Blast_Score=87, Evalue=3e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 51167; Mature: 51167

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS50949 HTH_GNTR ; PS00141 ASP_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQKAVRMNEGRTRVEMVVSTIRQRIAGRSLTPGARLPSVRGLAATLKLSTSTVVDAYER
CCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHH
LVAEGAILARPGSGFYVANQAAPFALAEAGPKLDRAVDPFWISRQSLEADETDLKPGCGW
HHHCCCEEECCCCCEEEECCCCCCHHHHCCCHHHHCCCCHHCCHHHCCCCCCCCCCCCCC
LPPSWLPGEGIRRGLRTLARADQPALAEYGSPLGLPPLRQLISRRMGERGIEASPDQIML
CCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEE
ADSGTQAIDLLCRFLLEPSDTVLVDDPCYFNFHALLRAHRAKIVGVPYTPSGPDIELFAQ
ECCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCEEEECCCCCCCCCHHHHHH
VVAEHRPRLYITNSAIHNPTGATLSPVTAHRLLKLADQFDLTIIEDDIFADFEYTPAPRL
HHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCEECCCCCCCCCH
AAFDGLDRVIHIGSFSKTLSASARCGFVAAKPEWIDGLTDLKIATSFGGGRLTAELVLNV
HHHHCHHHEEECCCCHHHHHCCCCCCEEECCCHHHCCCCCEEEEECCCCCHHHHHHHHHH
LSDGSYRKHTEMLRQRLSRAMSEVSAKLKGLGITPWLEPQAGMFLWCRLPNGIDAADVAR
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHH
AALERKIVLAPGNAFSLSQSATNFMRFNVSQMLDARVFEVLGDVLGRQGT
HHHHCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MVQKAVRMNEGRTRVEMVVSTIRQRIAGRSLTPGARLPSVRGLAATLKLSTSTVVDAYER
CCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHH
LVAEGAILARPGSGFYVANQAAPFALAEAGPKLDRAVDPFWISRQSLEADETDLKPGCGW
HHHCCCEEECCCCCEEEECCCCCCHHHHCCCHHHHCCCCHHCCHHHCCCCCCCCCCCCCC
LPPSWLPGEGIRRGLRTLARADQPALAEYGSPLGLPPLRQLISRRMGERGIEASPDQIML
CCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEE
ADSGTQAIDLLCRFLLEPSDTVLVDDPCYFNFHALLRAHRAKIVGVPYTPSGPDIELFAQ
ECCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCEEEECCCCCCCCCHHHHHH
VVAEHRPRLYITNSAIHNPTGATLSPVTAHRLLKLADQFDLTIIEDDIFADFEYTPAPRL
HHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCEECCCCCCCCCH
AAFDGLDRVIHIGSFSKTLSASARCGFVAAKPEWIDGLTDLKIATSFGGGRLTAELVLNV
HHHHCHHHEEECCCCHHHHHCCCCCCEEECCCHHHCCCCCEEEEECCCCCHHHHHHHHHH
LSDGSYRKHTEMLRQRLSRAMSEVSAKLKGLGITPWLEPQAGMFLWCRLPNGIDAADVAR
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHH
AALERKIVLAPGNAFSLSQSATNFMRFNVSQMLDARVFEVLGDVLGRQGT
HHHHCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]