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The map label for this gene is yciR [C]

Identifier: 209549885

GI number: 209549885

Start: 2355597

End: 2357249

Strand: Direct

Name: yciR [C]

Synonym: Rleg2_2301

Alternate gene names: 209549885

Gene position: 2355597-2357249 (Clockwise)

Preceding gene: 209549884

Following gene: 209549886

Centisome position: 51.91

GC content: 58.62

Gene sequence:

>1653_bases
ATGCGGAAAATTCGTGCGGCCAGCTCGGCCCTCGGACAAACACAGGCAGAAGCTTCGACTTCGATCGACCGGCTTTTGTT
CTTTGACCGCGACTTCAATCCCGTCGAGAACTTGCTCGGCAATGAGCTGCCTGCATCAGTCAAACCGGCCACGTCCCTTT
GGGAGCATTTTCCACAGCTGGACAAATCGGCGATTACGCTCGCTTTCCGCTCCTTGGATGACAGTGCCCAGCCGTTGCGA
ATATCGGGCGATCTGGGCGGGCCGGGCGCACACGGGCTGACGATCTATCGGATCGGCGAGCTGTTTGCCGTGGTTCGCTC
CGATGAGCTTGTTGACGATGAGCGCGCGACCCTTCTGCACCTGGCGACCCACGATCCGCTGACGGGACTGCCGAACCGAC
GCCAGTTCAGCGACGATCTTGCTGTGCTGCTGCAGGAGACCGCAGGCTCGGACGAGACCCTGTCTCTGATGCAGCTCGAC
CTTGACGATTTCAAGCCCGTCAACGACACACTTGGGCATCCAGCCGGTGACAAGCTTCTTCAATTTGCCGCAAGACGTAT
TCAAGACTGCCTGACCAGCGATGATAGAGCCTACCGACTGGCCGGCGACGAATTCACCGTCATTTCCAGGGGCTCGGGAC
ATCCGGCCAAAGCGCATCGGTTGGCGGAAGCTTTGGTTGCCGCATTCAAAAAGCCTTTCACGATCGATGGCATCGCGGTG
TTTGTCGGCACCAGCATCGGCATATCCACCGCTCCTCCGGATGGAACCAATCCGGAGCAGCTGATGAAGGCGTCCGACCT
CGCGCTTTATGCCGCCAAGCAAGACGGGCGCGGCCGGGCAAAAGCCTACGATCCGGCAATGCTTGAATTGCTGGAGCAAC
GCGAATTGCTGCGCCGCAGCCTGCGCATGGCTTTGGATCAACAGCAATTCTTCGTCGAGTATCAACCCCTTGCCGAAGGC
AGCCGCATCGTCGGGTTCGAAGCGTTGCTGAGATGGCACCACCCGCTACTTGGAAAAATTCCACCGGCGGCATTCATTCC
GATGGCCGAGGCCGATGGAATGATGCCTGACATCGGCGCATGGGTTTTGGAGCAGGCATGCCGCGAAGCGATGAAGTGGC
CTGAGAATTACATCGTGGCCGTCAATGTCTCGGCGGCGGAATTCTTGACGAGCGGCCTGACGGATCGCATATCGCAGACG
CTGGACCTGGTCGGACTTCCGCCCGAGCGTCTGGAGCTTGAGATCACCGAAAGCGTGCTGCTTGAGCGCACCGTCAATAA
CATCGACACCCTGAATACGCTCAACGTGCTGGGGATAAGGATCTCGCTGGATGATTTCGGGACCGAATATTCTTCGCTCA
GCTATCTCAAGACATTCCCTTTCGACACGATCAAAATCGACAAATACTTCATCACCGATCTGGAAACCGATCCGAAAAGC
CAGACGATCGTCCGCTGCGTCGTCAACCTCGCACATGGCCTCGACATGCAGGTGACAGCCGAAGGGGTCGAGACGCCGGC
TCAGGCGGAATGGCTGCACAGTGTGGGCTGCGACAGGCTTCAGGGCTATCTGGTGAGCAGGCCGCTTCCGGTCGAGGCGA
TCGGCGAATTCATCGACCGGGCTGAAACATCGGTGAGCCACGCGCTGGTATAG

Upstream 100 bases:

>100_bases
AATCAGGGGTGCCTAATGTAAATCTTGACGTGCACAAGTTGTGCGACAGTTGATTTGCTACGATATCTGGTTAGGACACT
CGACTGGGAGAGGCCCGAAG

Downstream 100 bases:

>100_bases
CAAACAAGAGATATTTCGCCGTGCTTTTTTGAGGGCATCTGACGCTCCAGACGAACTGATGGAGGCTGTATTGGAAGAGC
AAGCATCTGGCTTCGATGAC

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 550; Mature: 550

Protein sequence:

>550_residues
MRKIRAASSALGQTQAEASTSIDRLLFFDRDFNPVENLLGNELPASVKPATSLWEHFPQLDKSAITLAFRSLDDSAQPLR
ISGDLGGPGAHGLTIYRIGELFAVVRSDELVDDERATLLHLATHDPLTGLPNRRQFSDDLAVLLQETAGSDETLSLMQLD
LDDFKPVNDTLGHPAGDKLLQFAARRIQDCLTSDDRAYRLAGDEFTVISRGSGHPAKAHRLAEALVAAFKKPFTIDGIAV
FVGTSIGISTAPPDGTNPEQLMKASDLALYAAKQDGRGRAKAYDPAMLELLEQRELLRRSLRMALDQQQFFVEYQPLAEG
SRIVGFEALLRWHHPLLGKIPPAAFIPMAEADGMMPDIGAWVLEQACREAMKWPENYIVAVNVSAAEFLTSGLTDRISQT
LDLVGLPPERLELEITESVLLERTVNNIDTLNTLNVLGIRISLDDFGTEYSSLSYLKTFPFDTIKIDKYFITDLETDPKS
QTIVRCVVNLAHGLDMQVTAEGVETPAQAEWLHSVGCDRLQGYLVSRPLPVEAIGEFIDRAETSVSHALV

Sequences:

>Translated_550_residues
MRKIRAASSALGQTQAEASTSIDRLLFFDRDFNPVENLLGNELPASVKPATSLWEHFPQLDKSAITLAFRSLDDSAQPLR
ISGDLGGPGAHGLTIYRIGELFAVVRSDELVDDERATLLHLATHDPLTGLPNRRQFSDDLAVLLQETAGSDETLSLMQLD
LDDFKPVNDTLGHPAGDKLLQFAARRIQDCLTSDDRAYRLAGDEFTVISRGSGHPAKAHRLAEALVAAFKKPFTIDGIAV
FVGTSIGISTAPPDGTNPEQLMKASDLALYAAKQDGRGRAKAYDPAMLELLEQRELLRRSLRMALDQQQFFVEYQPLAEG
SRIVGFEALLRWHHPLLGKIPPAAFIPMAEADGMMPDIGAWVLEQACREAMKWPENYIVAVNVSAAEFLTSGLTDRISQT
LDLVGLPPERLELEITESVLLERTVNNIDTLNTLNVLGIRISLDDFGTEYSSLSYLKTFPFDTIKIDKYFITDLETDPKS
QTIVRCVVNLAHGLDMQVTAEGVETPAQAEWLHSVGCDRLQGYLVSRPLPVEAIGEFIDRAETSVSHALV
>Mature_550_residues
MRKIRAASSALGQTQAEASTSIDRLLFFDRDFNPVENLLGNELPASVKPATSLWEHFPQLDKSAITLAFRSLDDSAQPLR
ISGDLGGPGAHGLTIYRIGELFAVVRSDELVDDERATLLHLATHDPLTGLPNRRQFSDDLAVLLQETAGSDETLSLMQLD
LDDFKPVNDTLGHPAGDKLLQFAARRIQDCLTSDDRAYRLAGDEFTVISRGSGHPAKAHRLAEALVAAFKKPFTIDGIAV
FVGTSIGISTAPPDGTNPEQLMKASDLALYAAKQDGRGRAKAYDPAMLELLEQRELLRRSLRMALDQQQFFVEYQPLAEG
SRIVGFEALLRWHHPLLGKIPPAAFIPMAEADGMMPDIGAWVLEQACREAMKWPENYIVAVNVSAAEFLTSGLTDRISQT
LDLVGLPPERLELEITESVLLERTVNNIDTLNTLNVLGIRISLDDFGTEYSSLSYLKTFPFDTIKIDKYFITDLETDPKS
QTIVRCVVNLAHGLDMQVTAEGVETPAQAEWLHSVGCDRLQGYLVSRPLPVEAIGEFIDRAETSVSHALV

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=450, Percent_Identity=34.4444444444444, Blast_Score=270, Evalue=1e-73,
Organism=Escherichia coli, GI87081921, Length=429, Percent_Identity=32.8671328671329, Blast_Score=236, Evalue=3e-63,
Organism=Escherichia coli, GI226510982, Length=423, Percent_Identity=29.0780141843972, Blast_Score=182, Evalue=7e-47,
Organism=Escherichia coli, GI1788502, Length=253, Percent_Identity=34.7826086956522, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1790496, Length=252, Percent_Identity=32.1428571428571, Blast_Score=145, Evalue=7e-36,
Organism=Escherichia coli, GI1786507, Length=249, Percent_Identity=35.3413654618474, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI87081845, Length=235, Percent_Identity=36.1702127659575, Blast_Score=139, Evalue=4e-34,
Organism=Escherichia coli, GI87081980, Length=244, Percent_Identity=33.6065573770492, Blast_Score=127, Evalue=3e-30,
Organism=Escherichia coli, GI1787055, Length=431, Percent_Identity=26.4501160092807, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1788381, Length=434, Percent_Identity=25.8064516129032, Blast_Score=115, Evalue=6e-27,
Organism=Escherichia coli, GI87081743, Length=262, Percent_Identity=29.0076335877863, Blast_Score=109, Evalue=4e-25,
Organism=Escherichia coli, GI87082096, Length=424, Percent_Identity=26.1792452830189, Blast_Score=109, Evalue=5e-25,
Organism=Escherichia coli, GI1788849, Length=248, Percent_Identity=32.6612903225806, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI1788956, Length=162, Percent_Identity=33.9506172839506, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI87082007, Length=175, Percent_Identity=34.8571428571429, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787262, Length=169, Percent_Identity=32.5443786982249, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1786584, Length=166, Percent_Identity=33.1325301204819, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87081881, Length=167, Percent_Identity=35.3293413173653, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI87081977, Length=193, Percent_Identity=27.979274611399, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787410, Length=123, Percent_Identity=32.520325203252, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI145693134, Length=172, Percent_Identity=30.8139534883721, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87081974, Length=156, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1787802, Length=133, Percent_Identity=33.0827067669173, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1787816, Length=168, Percent_Identity=32.1428571428571, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1787056, Length=156, Percent_Identity=31.4102564102564, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 60502; Mature: 60502

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKIRAASSALGQTQAEASTSIDRLLFFDRDFNPVENLLGNELPASVKPATSLWEHFPQL
CCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHC
DKSAITLAFRSLDDSAQPLRISGDLGGPGAHGLTIYRIGELFAVVRSDELVDDERATLLH
CCHHHHHHHHHCCCCCCCEEEECCCCCCCCCCEEEEEHHHHHHHHHCCCCCCCCCCEEEE
LATHDPLTGLPNRRQFSDDLAVLLQETAGSDETLSLMQLDLDDFKPVNDTLGHPAGDKLL
EECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEHHEEECCCCCCCCHHHCCCCCHHHHH
QFAARRIQDCLTSDDRAYRLAGDEFTVISRGSGHPAKAHRLAEALVAAFKKPFTIDGIAV
HHHHHHHHHHHCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEECCEEE
FVGTSIGISTAPPDGTNPEQLMKASDLALYAAKQDGRGRAKAYDPAMLELLEQRELLRRS
EEECCCCCCCCCCCCCCHHHHHHHHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
LRMALDQQQFFVEYQPLAEGSRIVGFEALLRWHHPLLGKIPPAAFIPMAEADGMMPDIGA
HHHHHHHHHHHEEECCCCCCCEEHHHHHHHHHCCCHHCCCCCHHCCCCCCCCCCCCHHHH
WVLEQACREAMKWPENYIVAVNVSAAEFLTSGLTDRISQTLDLVGLPPERLELEITESVL
HHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEHHHHHHH
LERTVNNIDTLNTLNVLGIRISLDDFGTEYSSLSYLKTFPFDTIKIDKYFITDLETDPKS
HHHHHHHHHHHCCEEEEEEEEEHHHHCCCHHHHHHHHHCCCCEEEECEEEEECCCCCCCH
QTIVRCVVNLAHGLDMQVTAEGVETPAQAEWLHSVGCDRLQGYLVSRPLPVEAIGEFIDR
HHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHH
AETSVSHALV
HHHHHHHHCC
>Mature Secondary Structure
MRKIRAASSALGQTQAEASTSIDRLLFFDRDFNPVENLLGNELPASVKPATSLWEHFPQL
CCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHC
DKSAITLAFRSLDDSAQPLRISGDLGGPGAHGLTIYRIGELFAVVRSDELVDDERATLLH
CCHHHHHHHHHCCCCCCCEEEECCCCCCCCCCEEEEEHHHHHHHHHCCCCCCCCCCEEEE
LATHDPLTGLPNRRQFSDDLAVLLQETAGSDETLSLMQLDLDDFKPVNDTLGHPAGDKLL
EECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEHHEEECCCCCCCCHHHCCCCCHHHHH
QFAARRIQDCLTSDDRAYRLAGDEFTVISRGSGHPAKAHRLAEALVAAFKKPFTIDGIAV
HHHHHHHHHHHCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEECCEEE
FVGTSIGISTAPPDGTNPEQLMKASDLALYAAKQDGRGRAKAYDPAMLELLEQRELLRRS
EEECCCCCCCCCCCCCCHHHHHHHHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
LRMALDQQQFFVEYQPLAEGSRIVGFEALLRWHHPLLGKIPPAAFIPMAEADGMMPDIGA
HHHHHHHHHHHEEECCCCCCCEEHHHHHHHHHCCCHHCCCCCHHCCCCCCCCCCCCHHHH
WVLEQACREAMKWPENYIVAVNVSAAEFLTSGLTDRISQTLDLVGLPPERLELEITESVL
HHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEHHHHHHH
LERTVNNIDTLNTLNVLGIRISLDDFGTEYSSLSYLKTFPFDTIKIDKYFITDLETDPKS
HHHHHHHHHHHCCEEEEEEEEEHHHHCCCHHHHHHHHHCCCCEEEECEEEEECCCCCCCH
QTIVRCVVNLAHGLDMQVTAEGVETPAQAEWLHSVGCDRLQGYLVSRPLPVEAIGEFIDR
HHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHH
AETSVSHALV
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]