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The map label for this gene is yniC [C]

Identifier: 209549477

GI number: 209549477

Start: 1928303

End: 1928956

Strand: Reverse

Name: yniC [C]

Synonym: Rleg2_1883

Alternate gene names: 209549477

Gene position: 1928956-1928303 (Counterclockwise)

Preceding gene: 209549478

Following gene: 209549476

Centisome position: 42.51

GC content: 60.09

Gene sequence:

>654_bases
ATGAAACTCGCGCTTTTCGATTGCGACGGAACGCTGGTCGATAGCGCCGCCCTGATCCACGAAACCATGCGCCGCACCTT
CGAAAAGTTCGGCAAGCCGGAACCACGATTTGAAGATACCAAGGCGATCATCGGCCTGTCGCTCGATATCGCCATCGCCC
GCATGCAGGGCAGGCCGCATGTCGAGCAGCAGGATATCGAGATGACGGCGCATTACAAATCGCTGTTCTCGGTGGTGCGC
CAGGATCTCGACTACAAAGAGCCGCTGTTTCCCGGCATTCGCGAGATGATCGACGCGATATGCGGGCGCGAGGATCTGCT
GGTCGGTGCGGTGACCGGCAAATCCAGGCGCGGGCTTGATCTCGTGATGGAGACGCACGGCTTCGACCGACATTTCACCG
TTGCGCGCACCGCCGACGACTGCCCTTCCAAGCCGCATCCGGCCATGGTGACGGAGTGCTGCGACGAAACCGGCATGAAT
GCGCGCGATGCCATTGTCATCGGCGATGCGATTTACGATATGCAGATGGCAAAGGCTGCCGGCGCCAAGGCGATCGGCGT
CGCCTGGGGTTATGCCAGCGTGGATGAGCTGATCGCCAACGGCGCCGATGCGATCGCCTATCATCCGAACGAGATATTGC
GCCATTTTTCCTGA

Upstream 100 bases:

>100_bases
CCGGCGGCCGCCTGCGCGTCAGCGCACCGCTGCCACCGCATATGGTGCAGACCTGGAACCTTCTCGGTCTCGACCTTGCC
GGCGCCGAAAGGGACAGCGA

Downstream 100 bases:

>100_bases
GGTGAGCCCATGCGCGACCTGCTGAACGACCTTTCCGAAGGCCTGAGCCATCCCGACCCGATCCGCCGGGCTCAGATCCA
GATGAAGAAGCCGCTGCCGA

Product: HAD-superfamily hydrolase

Products: NA

Alternate protein names: PGP; PGPase [H]

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MKLALFDCDGTLVDSAALIHETMRRTFEKFGKPEPRFEDTKAIIGLSLDIAIARMQGRPHVEQQDIEMTAHYKSLFSVVR
QDLDYKEPLFPGIREMIDAICGREDLLVGAVTGKSRRGLDLVMETHGFDRHFTVARTADDCPSKPHPAMVTECCDETGMN
ARDAIVIGDAIYDMQMAKAAGAKAIGVAWGYASVDELIANGADAIAYHPNEILRHFS

Sequences:

>Translated_217_residues
MKLALFDCDGTLVDSAALIHETMRRTFEKFGKPEPRFEDTKAIIGLSLDIAIARMQGRPHVEQQDIEMTAHYKSLFSVVR
QDLDYKEPLFPGIREMIDAICGREDLLVGAVTGKSRRGLDLVMETHGFDRHFTVARTADDCPSKPHPAMVTECCDETGMN
ARDAIVIGDAIYDMQMAKAAGAKAIGVAWGYASVDELIANGADAIAYHPNEILRHFS
>Mature_217_residues
MKLALFDCDGTLVDSAALIHETMRRTFEKFGKPEPRFEDTKAIIGLSLDIAIARMQGRPHVEQQDIEMTAHYKSLFSVVR
QDLDYKEPLFPGIREMIDAICGREDLLVGAVTGKSRRGLDLVMETHGFDRHFTVARTADDCPSKPHPAMVTECCDETGMN
ARDAIVIGDAIYDMQMAKAAGAKAIGVAWGYASVDELIANGADAIAYHPNEILRHFS

Specific function: Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stres

COG id: COG0546

COG function: function code R; Predicted phosphatases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family [H]

Homologues:

Organism=Escherichia coli, GI1788021, Length=190, Percent_Identity=27.8947368421053, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1789787, Length=229, Percent_Identity=24.8908296943231, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006439
- InterPro:   IPR006402
- InterPro:   IPR005833
- InterPro:   IPR000150
- InterPro:   IPR006346
- InterPro:   IPR023198 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: =3.1.3.18 [H]

Molecular weight: Translated: 23972; Mature: 23972

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLALFDCDGTLVDSAALIHETMRRTFEKFGKPEPRFEDTKAIIGLSLDIAIARMQGRPH
CEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHEEEECCCCCC
VEQQDIEMTAHYKSLFSVVRQDLDYKEPLFPGIREMIDAICGREDLLVGAVTGKSRRGLD
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCE
LVMETHGFDRHFTVARTADDCPSKPHPAMVTECCDETGMNARDAIVIGDAIYDMQMAKAA
EEEECCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHC
GAKAIGVAWGYASVDELIANGADAIAYHPNEILRHFS
CCCEEEEECCHHHHHHHHHCCCCEEEECHHHHHHHCC
>Mature Secondary Structure
MKLALFDCDGTLVDSAALIHETMRRTFEKFGKPEPRFEDTKAIIGLSLDIAIARMQGRPH
CEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHEEEECCCCCC
VEQQDIEMTAHYKSLFSVVRQDLDYKEPLFPGIREMIDAICGREDLLVGAVTGKSRRGLD
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCE
LVMETHGFDRHFTVARTADDCPSKPHPAMVTECCDETGMNARDAIVIGDAIYDMQMAKAA
EEEECCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHC
GAKAIGVAWGYASVDELIANGADAIAYHPNEILRHFS
CCCEEEEECCHHHHHHHHHCCCCEEEECHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA