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The map label for this gene is mdcF [H]

Identifier: 209549240

GI number: 209549240

Start: 1671573

End: 1672535

Strand: Reverse

Name: mdcF [H]

Synonym: Rleg2_1641

Alternate gene names: 209549240

Gene position: 1672535-1671573 (Counterclockwise)

Preceding gene: 209549241

Following gene: 209549234

Centisome position: 36.86

GC content: 63.86

Gene sequence:

>963_bases
TTGGCCGATATCGTCAGCCTGCTCCTGCCGTTCTTCGGCCTGATCCTGATCGGTTACGCCGCCGCCAAGGCGACGAAGCA
GCCGGCCGAAGCGCTGGGATGGCTGAACACCTTCATCATCTATGCCGCCCTGCCCGCTCTGTTCTTCAAGCTCGTCTCGC
GTACGCCGATCGAAGAGCTGACGCGCGTCGATTTCATCCTCACCGATATCGCCGCGACCTATGCGGTCTTCATCCTGCTT
TTCGTCATCGGCCGCCTCCTGCGCCGCAATTCGCTCGCCGATTGCACGATCCAGTCCTTTGCCGGCGCCTATGGAAATAT
CGGCTATATGGGGCCGGGGCTGGCGCTCTTGGCGCTTGGCGAAGGTGCGGCCGTGCCGGTGGCGCTGATCATCTGCTTCG
AGAACGCCCTGCATTTCATCGTCGCGCCGGCGCTGATGGCGGCGGCCGGCGACGACAAACGTTCGGCCGGGCGGCTTGCC
GCCGATATCGCCCGAAAAGTGGCGCTGCATCCCTTCATCCTGTCGACGGCAGCAGGCTTTGCCGTCGCCGCCCTGCACAT
TGATCAGCCGCTGGCGTTCCAGCGCCTCGTCGACTACCTCGCCCAGGCGGCTGCTCCCTGCGCCCTCTTTGCCATGGGCG
TGACGCTGGCGCTCCGGCCACTGAAGCGGATTCCGGCAGAGATCGGCTATATCGTGCCGGCGAAGCTGATCCTGCATCCG
ATCGCGGTTTTCCTGGCGTTGACGGTTGTCGGCGGTTTCGAGCCGGTGTGGATCCAGGCCGCCGTGCTGCTTGCCTGCCT
GCCGACGGCGACCAACGTCTTCGTCATCGGCCAGCAATATGGCGTGTGGCAGGAGCGCGCCTCGGCGACGATCCTGATCA
CCACGGTGCTTTCGGTGGTCAGCGTTTCGCTCTGGCTGATCGCTATCCGCTCAGGCTTTCTTCCGCTTCAGCTTTTCCCT
TAA

Upstream 100 bases:

>100_bases
TGTTTTCACCCAACTCCAGCAAAACCGCTGTGCACTTTGGCTGGAATTGCTTTAAATCGGATCCCTACCCGCCTGTAATC
CCCGTGCACTGGAAGACCTC

Downstream 100 bases:

>100_bases
GGACTCCGGAATATCGCGGAAGCCGCGGCCGGGCTCGATGCCCTCGCGCATGACGATGCTGCGCAGCGGCGGAATGGCCG
AGAGGATATGCAGGCCGGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 319

Protein sequence:

>320_residues
MADIVSLLLPFFGLILIGYAAAKATKQPAEALGWLNTFIIYAALPALFFKLVSRTPIEELTRVDFILTDIAATYAVFILL
FVIGRLLRRNSLADCTIQSFAGAYGNIGYMGPGLALLALGEGAAVPVALIICFENALHFIVAPALMAAAGDDKRSAGRLA
ADIARKVALHPFILSTAAGFAVAALHIDQPLAFQRLVDYLAQAAAPCALFAMGVTLALRPLKRIPAEIGYIVPAKLILHP
IAVFLALTVVGGFEPVWIQAAVLLACLPTATNVFVIGQQYGVWQERASATILITTVLSVVSVSLWLIAIRSGFLPLQLFP

Sequences:

>Translated_320_residues
MADIVSLLLPFFGLILIGYAAAKATKQPAEALGWLNTFIIYAALPALFFKLVSRTPIEELTRVDFILTDIAATYAVFILL
FVIGRLLRRNSLADCTIQSFAGAYGNIGYMGPGLALLALGEGAAVPVALIICFENALHFIVAPALMAAAGDDKRSAGRLA
ADIARKVALHPFILSTAAGFAVAALHIDQPLAFQRLVDYLAQAAAPCALFAMGVTLALRPLKRIPAEIGYIVPAKLILHP
IAVFLALTVVGGFEPVWIQAAVLLACLPTATNVFVIGQQYGVWQERASATILITTVLSVVSVSLWLIAIRSGFLPLQLFP
>Mature_319_residues
ADIVSLLLPFFGLILIGYAAAKATKQPAEALGWLNTFIIYAALPALFFKLVSRTPIEELTRVDFILTDIAATYAVFILLF
VIGRLLRRNSLADCTIQSFAGAYGNIGYMGPGLALLALGEGAAVPVALIICFENALHFIVAPALMAAAGDDKRSAGRLAA
DIARKVALHPFILSTAAGFAVAALHIDQPLAFQRLVDYLAQAAAPCALFAMGVTLALRPLKRIPAEIGYIVPAKLILHPI
AVFLALTVVGGFEPVWIQAAVLLACLPTATNVFVIGQQYGVWQERASATILITTVLSVVSVSLWLIAIRSGFLPLQLFP

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004776 [H]

Pfam domain/function: PF03547 Mem_trans [H]

EC number: NA

Molecular weight: Translated: 34052; Mature: 33921

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADIVSLLLPFFGLILIGYAAAKATKQPAEALGWLNTFIIYAALPALFFKLVSRTPIEEL
CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
TRVDFILTDIAATYAVFILLFVIGRLLRRNSLADCTIQSFAGAYGNIGYMGPGLALLALG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHEEEEC
EGAAVPVALIICFENALHFIVAPALMAAAGDDKRSAGRLAADIARKVALHPFILSTAAGF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVAALHIDQPLAFQRLVDYLAQAAAPCALFAMGVTLALRPLKRIPAEIGYIVPAKLILHP
HHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCHHHHCHHHHHHHHHHH
IAVFLALTVVGGFEPVWIQAAVLLACLPTATNVFVIGQQYGVWQERASATILITTVLSVV
HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHCCCHHHHHHHHHHH
SVSLWLIAIRSGFLPLQLFP
HHHHHHHHHHCCCCCEEECC
>Mature Secondary Structure 
ADIVSLLLPFFGLILIGYAAAKATKQPAEALGWLNTFIIYAALPALFFKLVSRTPIEEL
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
TRVDFILTDIAATYAVFILLFVIGRLLRRNSLADCTIQSFAGAYGNIGYMGPGLALLALG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHEEEEC
EGAAVPVALIICFENALHFIVAPALMAAAGDDKRSAGRLAADIARKVALHPFILSTAAGF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVAALHIDQPLAFQRLVDYLAQAAAPCALFAMGVTLALRPLKRIPAEIGYIVPAKLILHP
HHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCHHHHCHHHHHHHHHHH
IAVFLALTVVGGFEPVWIQAAVLLACLPTATNVFVIGQQYGVWQERASATILITTVLSVV
HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHCCCHHHHHHHHHHH
SVSLWLIAIRSGFLPLQLFP
HHHHHHHHHHCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10858449; 11481430 [H]