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The map label for this gene is yhdW [H]

Identifier: 209549175

GI number: 209549175

Start: 1601296

End: 1602015

Strand: Reverse

Name: yhdW [H]

Synonym: Rleg2_1576

Alternate gene names: 209549175

Gene position: 1602015-1601296 (Counterclockwise)

Preceding gene: 209549176

Following gene: 209549174

Centisome position: 35.3

GC content: 62.08

Gene sequence:

>720_bases
ATGACCAATGCGGCCTGGATCCGGGACGTGCCGGTCGCCCATCGCGGCTATCACGACCTCAATAAACTCGTCTGGGAAAA
CACGCTTTCTGCCTTTTCGCGAGCCGTCGAAGCGGGTTTTGCGATCGAATGCGACCTGCATTACGCCTCCGACGGCGTGC
CGGTCGTCTTTCACGACGAGGACCTGCAGCGGCTCTGCAATCTTCCGGGCGACATTCGCGAGCGCACCTCCCGTGAGCTC
GGACTGATCGCCGTCGGCGGCACTGGAGACAAGGTGCCGACGCTCCGCCAGCTTCTCGATCTCGTCCAGGGCAAGGTGCC
GCTGGTGCTGGAGCTGAAGGGCCGCGAGGCCGATGACGAGGGATTTGCAGAAGCCGTGCTCGAAGTGCTTCAGGATTATC
AGGGCAAGGTGGCGCTGATGAGCTTCGACCACTGGCTGCTGCGCGATCTGAAGGCGCTTGACGCGCCCTACCCGCTTGGT
CTTACCGCCAACGGCAACACGCCGGTGGAGTTAGCGACGCATGCGAAGGCGATGGAGATCGGTCTCGATTTCATCTCCTA
TTATTATGGCGACCTGCCGAACGCCTTCATCTCAGGCGAACGTGAAAAGGGCATCCCCGTCATCACCTGGACGGTGCGCG
ACGAAGAAGCGCGCCGGCGCACCTTCGCCAACGCGGACCAGATGACCTTCGAAGGCTTCGACCCGCGTGTGGCGGTTTGA

Upstream 100 bases:

>100_bases
TGCTCGGCGAGGCCGGCAAACATGCGCGTGCCGCCGTCGGCATGGCCGCCCTGCCGCTGAACGCCGCCGTCGAGATCGAT
GCTATCATGGAAATCGCGGA

Downstream 100 bases:

>100_bases
CGCTCGCTTTTTGGCCAAGATCATGCGCAGACTGAGGTAGAGCCGAACCGTCTTTCCCCACAGGCTTCGCATTTGCCCCA
TGACCGATGAATTATCCATT

Product: glycerophosphoryl diester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MTNAAWIRDVPVAHRGYHDLNKLVWENTLSAFSRAVEAGFAIECDLHYASDGVPVVFHDEDLQRLCNLPGDIRERTSREL
GLIAVGGTGDKVPTLRQLLDLVQGKVPLVLELKGREADDEGFAEAVLEVLQDYQGKVALMSFDHWLLRDLKALDAPYPLG
LTANGNTPVELATHAKAMEIGLDFISYYYGDLPNAFISGEREKGIPVITWTVRDEEARRRTFANADQMTFEGFDPRVAV

Sequences:

>Translated_239_residues
MTNAAWIRDVPVAHRGYHDLNKLVWENTLSAFSRAVEAGFAIECDLHYASDGVPVVFHDEDLQRLCNLPGDIRERTSREL
GLIAVGGTGDKVPTLRQLLDLVQGKVPLVLELKGREADDEGFAEAVLEVLQDYQGKVALMSFDHWLLRDLKALDAPYPLG
LTANGNTPVELATHAKAMEIGLDFISYYYGDLPNAFISGEREKGIPVITWTVRDEEARRRTFANADQMTFEGFDPRVAV
>Mature_238_residues
TNAAWIRDVPVAHRGYHDLNKLVWENTLSAFSRAVEAGFAIECDLHYASDGVPVVFHDEDLQRLCNLPGDIRERTSRELG
LIAVGGTGDKVPTLRQLLDLVQGKVPLVLELKGREADDEGFAEAVLEVLQDYQGKVALMSFDHWLLRDLKALDAPYPLGL
TANGNTPVELATHAKAMEIGLDFISYYYGDLPNAFISGEREKGIPVITWTVRDEEARRRTFANADQMTFEGFDPRVAV

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 26613; Mature: 26482

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNAAWIRDVPVAHRGYHDLNKLVWENTLSAFSRAVEAGFAIECDLHYASDGVPVVFHDE
CCCCCCEECCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCEEEEECCH
DLQRLCNLPGDIRERTSRELGLIAVGGTGDKVPTLRQLLDLVQGKVPLVLELKGREADDE
HHHHHHCCCHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCH
GFAEAVLEVLQDYQGKVALMSFDHWLLRDLKALDAPYPLGLTANGNTPVELATHAKAMEI
HHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCCCCEEEECCCCCEEHHHHHHHHHH
GLDFISYYYGDLPNAFISGEREKGIPVITWTVRDEEARRRTFANADQMTFEGFDPRVAV
HHHHHHHHHHCCCCHHHCCCCCCCCEEEEEEECCHHHHHHHHCCCCCEEECCCCCCCCC
>Mature Secondary Structure 
TNAAWIRDVPVAHRGYHDLNKLVWENTLSAFSRAVEAGFAIECDLHYASDGVPVVFHDE
CCCCCEECCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCEEEEECCH
DLQRLCNLPGDIRERTSRELGLIAVGGTGDKVPTLRQLLDLVQGKVPLVLELKGREADDE
HHHHHHCCCHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCH
GFAEAVLEVLQDYQGKVALMSFDHWLLRDLKALDAPYPLGLTANGNTPVELATHAKAMEI
HHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCCCCEEEECCCCCEEHHHHHHHHHH
GLDFISYYYGDLPNAFISGEREKGIPVITWTVRDEEARRRTFANADQMTFEGFDPRVAV
HHHHHHHHHHCCCCHHHCCCCCCCCEEEEEEECCHHHHHHHHCCCCCEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]