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The map label for this gene is quuD [H]

Identifier: 209400533

GI number: 209400533

Start: 2964795

End: 2965229

Strand: Reverse

Name: quuD [H]

Synonym: ECH74115_3220

Alternate gene names: 209400533

Gene position: 2965229-2964795 (Counterclockwise)

Preceding gene: 209396087

Following gene: 209398441

Centisome position: 53.22

GC content: 50.34

Gene sequence:

>435_bases
ATGCGTGATATTCAGATGGTTCTTGAGCGTTGGGGAGCGTGGGCGGCTAATAATCATGAAGATGTGACCTGGTCGTCCAT
TGCCGCCGGTTTTAAGGGACTGATCCCCGAAAAAGTAAAATCACGCCCGCAGTGCTGTGACGATGATGCGATGGTGATAT
GCGGGTGTATAGCCCGCCTTTACCGGAACAATCGCGATCTGCATGACTTGCTGGTTGATTATTACGTGTTGGGGGAGACG
TTCATGGCGCTGGCACGGAAACATGGGTGCTCTGACACCTGTATAGGTAAACGCCTTCACAAAGCGGAGGGGATTGTTGA
AGGCATGCTGATGATGCTGGGAGTGAGGCTTGAGATGGATCGGTATGTTGAGCGTGAATTGCCGGGAGGGAGAACCTCTG
TATTTTATCAGCGAAAAAATAGTTTACGATCGTAA

Upstream 100 bases:

>100_bases
GGAGCAGGAGTATGAAGTCAGAGATAACAATCAACTAATACTGTTTTGTTGATTTTTGCTTGTAATTGGCGTTCTGGTCT
GATTTTTGTGGAGTAAGTTG

Downstream 100 bases:

>100_bases
AAATCTGCATATCATGATAAGAGTGGTTACATTGCCACGCTGCTTATTAACCCGCCGATGCGCGGGTTTTTTTGTACCCA
GAATCCTGTGAGCTATACGG

Product: antitermination protein Q

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLIPEKVKSRPQCCDDDAMVICGCIARLYRNNRDLHDLLVDYYVLGET
FMALARKHGCSDTCIGKRLHKAEGIVEGMLMMLGVRLEMDRYVERELPGGRTSVFYQRKNSLRS

Sequences:

>Translated_144_residues
MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLIPEKVKSRPQCCDDDAMVICGCIARLYRNNRDLHDLLVDYYVLGET
FMALARKHGCSDTCIGKRLHKAEGIVEGMLMMLGVRLEMDRYVERELPGGRTSVFYQRKNSLRS
>Mature_144_residues
MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLIPEKVKSRPQCCDDDAMVICGCIARLYRNNRDLHDLLVDYYVLGET
FMALARKHGCSDTCIGKRLHKAEGIVEGMLMMLGVRLEMDRYVERELPGGRTSVFYQRKNSLRS

Specific function: Positively regulate expression of some phage genes. Bacterial host RNA polymerase modified by antitermination proteins transcribes through termination sites that otherwise prevent expression of the regulated genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage antitermination Q type 1 family [H]

Homologues:

Organism=Escherichia coli, GI1786763, Length=126, Percent_Identity=80.9523809523809, Blast_Score=214, Evalue=2e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010534 [H]

Pfam domain/function: PF06530 Phage_antitermQ [H]

EC number: NA

Molecular weight: Translated: 16471; Mature: 16471

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.2 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
9.7 %Cys+Met (Translated Protein)
4.2 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
9.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLIPEKVKSRPQCCDDDAMVICGCIARL
CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCCCHHHHHHHHHHHH
YRNNRDLHDLLVDYYVLGETFMALARKHGCSDTCIGKRLHKAEGIVEGMLMMLGVRLEMD
HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RYVERELPGGRTSVFYQRKNSLRS
HHHHHHCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLIPEKVKSRPQCCDDDAMVICGCIARL
CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCCCHHHHHHHHHHHH
YRNNRDLHDLLVDYYVLGETFMALARKHGCSDTCIGKRLHKAEGIVEGMLMMLGVRLEMD
HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RYVERELPGGRTSVFYQRKNSLRS
HHHHHHCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8648624; 9278503 [H]