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The map label for this gene is fimF [H]

Identifier: 209400351

GI number: 209400351

Start: 5476281

End: 5476811

Strand: Direct

Name: fimF [H]

Synonym: ECH74115_5824

Alternate gene names: 209400351

Gene position: 5476281-5476811 (Clockwise)

Preceding gene: 209397655

Following gene: 209398557

Centisome position: 98.28

GC content: 49.34

Gene sequence:

>531_bases
ATGAGAAACAAACCTTTTTATCTTCTGTGCGCTTTTTTGTGGCTGGCAGTGAGTCACGCTTTGGCTGCGGATAGCACGAT
TACTATCCGCGGCTATGTCAGAGATAACGGCTGTAGTGTGGCCGCTGAATCAACCAATTTTACTGTTGATCTGATGGAAA
ACGCGGCGAAGCAATTTAACAACATTGGCGCGACGACTCCTGTCGTTCCATTTCGTATTTTGCTGTCACCCTGTGGTAAC
GCCGTTTCTGCCGTAAAAGTTGGGTTTACCGGCGTTGCAGATAGCCACAATGCCAACCTGCTTGCACTTGAAAATACGGT
GTCAGCGGCTTCGGGACTGGGAATACAGCTTCTGAATGAGCAGCAAAATCAGATACCCCTTAATGCTCCATCGTCCGCGA
TTTCGTGGACGACCCTGACGCCGGGTAAACCAAATACGTTGAATTTTTACGCCCGGCTAATGGCGACACAGGTGCCTGTC
ACTGCGGGGCATATCAATGCCACGGCTACCTTCACTCTTGAATATCAGTAA

Upstream 100 bases:

>100_bases
AGAGGAAAATGCTCATTGTGTCGCCAATTATCAACTGCCACCAGAGAGTCAGCAGCAGTTATTAACCCAGCTATCAGCTG
AATGTCGTTAAGGGGGCGTG

Downstream 100 bases:

>100_bases
CTGGAGATGCTCATGAAATGGCGCAAACGTGGGTATTTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACGATACAGGC
AGCCGATGTCACCATCACGG

Product: fimbrial protein FimF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MRNKPFYLLCAFLWLAVSHALAADSTITIRGYVRDNGCSVAAESTNFTVDLMENAAKQFNNIGATTPVVPFRILLSPCGN
AVSAVKVGFTGVADSHNANLLALENTVSAASGLGIQLLNEQQNQIPLNAPSSAISWTTLTPGKPNTLNFYARLMATQVPV
TAGHINATATFTLEYQ

Sequences:

>Translated_176_residues
MRNKPFYLLCAFLWLAVSHALAADSTITIRGYVRDNGCSVAAESTNFTVDLMENAAKQFNNIGATTPVVPFRILLSPCGN
AVSAVKVGFTGVADSHNANLLALENTVSAASGLGIQLLNEQQNQIPLNAPSSAISWTTLTPGKPNTLNFYARLMATQVPV
TAGHINATATFTLEYQ
>Mature_176_residues
MRNKPFYLLCAFLWLAVSHALAADSTITIRGYVRDNGCSVAAESTNFTVDLMENAAKQFNNIGATTPVVPFRILLSPCGN
AVSAVKVGFTGVADSHNANLLALENTVSAASGLGIQLLNEQQNQIPLNAPSSAISWTTLTPGKPNTLNFYARLMATQVPV
TAGHINATATFTLEYQ

Specific function: Involved in regulation of length and mediation of adhesion of type 1 fimbriae (but not necessary for the production of fimbriae). Involved in the integration of fimH in the fimbriae [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1790773, Length=176, Percent_Identity=99.4318181818182, Blast_Score=358, Evalue=1e-101,
Organism=Escherichia coli, GI1787781, Length=171, Percent_Identity=45.0292397660819, Blast_Score=149, Evalue=1e-37,
Organism=Escherichia coli, GI87081805, Length=156, Percent_Identity=37.8205128205128, Blast_Score=90, Evalue=7e-20,
Organism=Escherichia coli, GI87082421, Length=185, Percent_Identity=30.8108108108108, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI87081753, Length=163, Percent_Identity=33.1288343558282, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI1786746, Length=179, Percent_Identity=32.9608938547486, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1787174, Length=186, Percent_Identity=28.494623655914, Blast_Score=61, Evalue=4e-11,
Organism=Escherichia coli, GI1790769, Length=154, Percent_Identity=34.4155844155844, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 18715; Mature: 18715

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNKPFYLLCAFLWLAVSHALAADSTITIRGYVRDNGCSVAAESTNFTVDLMENAAKQFN
CCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCEEEECCCCEEEHHHHHHHHHHH
NIGATTPVVPFRILLSPCGNAVSAVKVGFTGVADSHNANLLALENTVSAASGLGIQLLNE
CCCCCCCCHHHHHEECCCCCCEEEEEECEEECCCCCCCEEEEEECCCCCCCCCCEEEECC
QQNQIPLNAPSSAISWTTLTPGKPNTLNFYARLMATQVPVTAGHINATATFTLEYQ
CCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEECCCCEEEEEEEEEC
>Mature Secondary Structure
MRNKPFYLLCAFLWLAVSHALAADSTITIRGYVRDNGCSVAAESTNFTVDLMENAAKQFN
CCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCEEEECCCCEEEHHHHHHHHHHH
NIGATTPVVPFRILLSPCGNAVSAVKVGFTGVADSHNANLLALENTVSAASGLGIQLLNE
CCCCCCCCHHHHHEECCCCCCEEEEEECEEECCCCCCCEEEEEECCCCCCCCCCEEEECC
QQNQIPLNAPSSAISWTTLTPGKPNTLNFYARLMATQVPVTAGHINATATFTLEYQ
CCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEECCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2890081; 7610040; 9278503; 1970114 [H]