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The map label for this gene is yjgJ [H]

Identifier: 209400039

GI number: 209400039

Start: 5404845

End: 5405438

Strand: Direct

Name: yjgJ [H]

Synonym: ECH74115_5772

Alternate gene names: 209400039

Gene position: 5404845-5405438 (Clockwise)

Preceding gene: 209396583

Following gene: 209399615

Centisome position: 97.0

GC content: 49.66

Gene sequence:

>594_bases
ATGGTTACTAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAGTCTCTGCGGCAAAAGT
GCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAACCCCCCGAGCCTCT
ACGCGGCTTTTGGCAGTAAGGCTGGGTTATTTAGCCGTGTACTCAATGAATATGTCGGTACGGAAGCTATTCCGCTTGTC
GATATTCTTCGTGATGATCGTCCGGTAGGGGAGTGCCTGGCTGAGGTATTAAAAGAAGCGGCGCGCAGATATAGCCAAAA
CGGCGGCTGCGCTGGCTGTATGGTTCTTGAAGGCATTCATAGTCATGATCCACAAGCGCGTGATATTGCCGTTCAATATT
ATCACGCCGCAGAAACGGCCATTTATGACTATATCGCCAGGCTGCATCCACAAAGCGCACAATGTGTGACTGATTTTATG
AGTACCGTGATGTCAGGGCTTTCTGCGAAGGCACGAGAGGGGCACTCCCTCGAACAACTCTGTGCAACTGCTGCACTGGC
GGGGGAAGCGATAAAAACTATTCTCAAGGAGTGA

Upstream 100 bases:

>100_bases
GAGAACTGTCTTACCTGTAAAAGCGCCCATAAGGACTCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACT
TTCTGTCAACAAGTTTTGTA

Downstream 100 bases:

>100_bases
TGCTGGCCTTGATCCGAAAGGCGGGAACGCGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTGGCT
GAATTGATCATCTTTTCGTA

Product: transcriptional regulator, TetR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MVTKKQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTDYLGINPPSLYAAFGSKAGLFSRVLNEYVGTEAIPLV
DILRDDRPVGECLAEVLKEAARRYSQNGGCAGCMVLEGIHSHDPQARDIAVQYYHAAETAIYDYIARLHPQSAQCVTDFM
STVMSGLSAKAREGHSLEQLCATAALAGEAIKTILKE

Sequences:

>Translated_197_residues
MVTKKQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTDYLGINPPSLYAAFGSKAGLFSRVLNEYVGTEAIPLV
DILRDDRPVGECLAEVLKEAARRYSQNGGCAGCMVLEGIHSHDPQARDIAVQYYHAAETAIYDYIARLHPQSAQCVTDFM
STVMSGLSAKAREGHSLEQLCATAALAGEAIKTILKE
>Mature_197_residues
MVTKKQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTDYLGINPPSLYAAFGSKAGLFSRVLNEYVGTEAIPLV
DILRDDRPVGECLAEVLKEAARRYSQNGGCAGCMVLEGIHSHDPQARDIAVQYYHAAETAIYDYIARLHPQSAQCVTDFM
STVMSGLSAKAREGHSLEQLCATAALAGEAIKTILKE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082397, Length=197, Percent_Identity=95.4314720812183, Blast_Score=393, Evalue=1e-111,
Organism=Escherichia coli, GI87081833, Length=187, Percent_Identity=29.9465240641711, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21327; Mature: 21327

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTKKQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTDYLGINPPSLYAAFGSK
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHCCC
AGLFSRVLNEYVGTEAIPLVDILRDDRPVGECLAEVLKEAARRYSQNGGCAGCMVLEGIH
HHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
SHDPQARDIAVQYYHAAETAIYDYIARLHPQSAQCVTDFMSTVMSGLSAKAREGHSLEQL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
CATAALAGEAIKTILKE
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVTKKQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTDYLGINPPSLYAAFGSK
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHCCC
AGLFSRVLNEYVGTEAIPLVDILRDDRPVGECLAEVLKEAARRYSQNGGCAGCMVLEGIH
HHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
SHDPQARDIAVQYYHAAETAIYDYIARLHPQSAQCVTDFMSTVMSGLSAKAREGHSLEQL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
CATAALAGEAIKTILKE
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]