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The map label for this gene is ycbB [H]

Identifier: 209399966

GI number: 209399966

Start: 1114057

End: 1115892

Strand: Direct

Name: ycbB [H]

Synonym: ECH74115_1086

Alternate gene names: 209399966

Gene position: 1114057-1115892 (Clockwise)

Preceding gene: 209397222

Following gene: 209396717

Centisome position: 19.99

GC content: 53.27

Gene sequence:

>1836_bases
ATGATGTGTGGTCGTCGGCTGTCGGCAATCAGTTTGTGCCTGGCCGTAACATTCGCTCCACTGTTCAATGCGCAGGCCGA
TGAGCCTGAAGTAATCCCTGGCGACAGCCCGGTGGCTGTCAGTGAACAGGGCGAGGCACTGCCGCAGGCGCAAGCCACGG
CAATAATGGCGGGGATCCTGCCATTGCCTGAAGGTGCGGCAGAAAAAGCCCGCACGCAAATCGAATCTCAATTACCCGCA
GGTTACAAGCCGGTTTATCTTAACCAGCTTCAACTGTTGTATGCCGCACGCGATATGCAACCCATGTGGGAAAACCGTGA
TGCTGTTAAAGCCTTCCAGCAACAGCTGGCAGAGGTGGCGATTGCCGGTTTCCAGCCGCAGTTTAATAAATGGGTAGAGT
TACTGACCGATCCTGGTGTTAACGGGATGGCACGCGACGTGGTGCTCTCTGATGCGATGATGGGCTATCTCCATTTCATT
GCAAATATTCCGGTCAAAGGCACTCGCTGGCTATATAGCAGTAAACCTTATGCGCTTGCAACGCCGCCGCTTTCGGTGAT
TAACCAATGGCAGCAGGCGCTGGATAAAGGTCAATTGCCTACGTTTGTTGCAGGACTGGCACCGCAGCATCCGCAATATG
CGGTGATGCATGAATCGTTACTGGCCTTACTCAGTGACACCAAACCGTGGCCCCAACTGACCGGCAAAGCAACGTTGCGC
CCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGTGAAATATTGCAACGCACAGGCATGTTGGACGGGGGGCCGAAAAT
TACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGAAACAGCAGAAACTAAGC
CGATGGATAAGCAAACGACGTCTCGTAGTAAACCTGCGCCTGCCGTTCGCGCCGCCTACGATAATGAACTGGTGGAAGCC
GTTAAACGTTTTCAGGCATGGCAAGGATTGGGGGCAGATGGTGCTATTGGCCCGGCAACGCGTGACTGGTTAAACGTAAC
GCCCGCCCAGCGTGCTGGCGTGTTGGCTCTCAACATCCAGCGATTGCGCTTGCTGCCAACAGAGCTTTCTACCGGGATCA
TGGTTAACATTCCGGCCTATTCGCTGGTCTACTATCAGAACGGCAATCAGGTGCTGGATTCGCGAGTCATTGTCGGTCGC
CCCGATCGCAAAACGCCGATGATGAGCAGTGCCCTTAACAATGTAGTGGTAAACCCGCCGTGGAACGTACCTCCAACTCT
GGCACGCAAAGATATTCTGCCGAAAGTGCGCAACGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCT
GGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCGTTTCGCTTCCAA
CAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGACAC
GCCGAACCACAATCTGTTCAAGCGTGATACACGCGCATTGAGCTCAGGCTGTGTACGAGTGAATAAAGCTTCCGATCTGG
CGAATATGCTGTTGCAGGATGCAGGCTGGAATGACAAACGTATTTCTGATGCGCTGAAGCAGGGTGATACACGTTACGTC
AATATTCGGCAGTCGATTCCGGTGAATCTCTACTACCTGACGGCCTTTGTTGGTGCAGATGGTCGTACCCAGTATCGTAC
AGATATTTACAATTATGATCTGCCTGCGCGATCCAGCTCGCAAATCGTATCGAAAGCGGAACAATTAATCAGGTAA

Upstream 100 bases:

>100_bases
CATACTTTCGTGAGTATTGGCGTTGTACAGGCAAGTCGTAAAATAACAGCCTGGCTATTCAGAGTATGATAAAAACAGGG
GGCAAGGGATGTTGCTTAAT

Downstream 100 bases:

>100_bases
ATGAAGTAGTTCGGGGAAATCAGTTGTCGTAATAATTAGCATGATTGGGGGCAATTCTCTGCAGCCCCCGTCACTGCTGG
GGTTGAGTCATCTTGACGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 611; Mature: 611

Protein sequence:

>611_residues
MMCGRRLSAISLCLAVTFAPLFNAQADEPEVIPGDSPVAVSEQGEALPQAQATAIMAGILPLPEGAAEKARTQIESQLPA
GYKPVYLNQLQLLYAARDMQPMWENRDAVKAFQQQLAEVAIAGFQPQFNKWVELLTDPGVNGMARDVVLSDAMMGYLHFI
ANIPVKGTRWLYSSKPYALATPPLSVINQWQQALDKGQLPTFVAGLAPQHPQYAVMHESLLALLSDTKPWPQLTGKATLR
PGQWSNDVPALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEA
VKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTELSTGIMVNIPAYSLVYYQNGNQVLDSRVIVGR
PDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQ
QAPGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDAGWNDKRISDALKQGDTRYV
NIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYDLPARSSSQIVSKAEQLIR

Sequences:

>Translated_611_residues
MMCGRRLSAISLCLAVTFAPLFNAQADEPEVIPGDSPVAVSEQGEALPQAQATAIMAGILPLPEGAAEKARTQIESQLPA
GYKPVYLNQLQLLYAARDMQPMWENRDAVKAFQQQLAEVAIAGFQPQFNKWVELLTDPGVNGMARDVVLSDAMMGYLHFI
ANIPVKGTRWLYSSKPYALATPPLSVINQWQQALDKGQLPTFVAGLAPQHPQYAVMHESLLALLSDTKPWPQLTGKATLR
PGQWSNDVPALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEA
VKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTELSTGIMVNIPAYSLVYYQNGNQVLDSRVIVGR
PDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQ
QAPGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDAGWNDKRISDALKQGDTRYV
NIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYDLPARSSSQIVSKAEQLIR
>Mature_611_residues
MMCGRRLSAISLCLAVTFAPLFNAQADEPEVIPGDSPVAVSEQGEALPQAQATAIMAGILPLPEGAAEKARTQIESQLPA
GYKPVYLNQLQLLYAARDMQPMWENRDAVKAFQQQLAEVAIAGFQPQFNKWVELLTDPGVNGMARDVVLSDAMMGYLHFI
ANIPVKGTRWLYSSKPYALATPPLSVINQWQQALDKGQLPTFVAGLAPQHPQYAVMHESLLALLSDTKPWPQLTGKATLR
PGQWSNDVPALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEA
VKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTELSTGIMVNIPAYSLVYYQNGNQVLDSRVIVGR
PDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQ
QAPGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDAGWNDKRISDALKQGDTRYV
NIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYDLPARSSSQIVSKAEQLIR

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=611, Percent_Identity=99.1816693944354, Blast_Score=1242, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 67382; Mature: 67382

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMCGRRLSAISLCLAVTFAPLFNAQADEPEVIPGDSPVAVSEQGEALPQAQATAIMAGIL
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCC
PLPEGAAEKARTQIESQLPAGYKPVYLNQLQLLYAARDMQPMWENRDAVKAFQQQLAEVA
CCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHH
IAGFQPQFNKWVELLTDPGVNGMARDVVLSDAMMGYLHFIANIPVKGTRWLYSSKPYALA
HHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEE
TPPLSVINQWQQALDKGQLPTFVAGLAPQHPQYAVMHESLLALLSDTKPWPQLTGKATLR
CCCHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEC
PGQWSNDVPALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTT
CCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCEECCCEEEEEECCCCCCCCHHC
SRSKPAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHCCEEEEEHH
RLRLLPTELSTGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPP
HHHEEHHHCCCCEEEECCCEEEEEEECCCEEECCEEEEECCCCCCHHHHHHHCCEEECCC
WNVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQ
CCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCEEEE
QAPGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQD
CCCCCCCCCCCEEECCCCCCEEEEECCCCCCHHHHHHHHHHHCCEEECCHHHHHHHHHHH
AGWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYDLPARSSS
CCCCHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEEECCCCCCEEEHEEECCCCCCCCHH
QIVSKAEQLIR
HHHHHHHHHCC
>Mature Secondary Structure
MMCGRRLSAISLCLAVTFAPLFNAQADEPEVIPGDSPVAVSEQGEALPQAQATAIMAGIL
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCC
PLPEGAAEKARTQIESQLPAGYKPVYLNQLQLLYAARDMQPMWENRDAVKAFQQQLAEVA
CCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHH
IAGFQPQFNKWVELLTDPGVNGMARDVVLSDAMMGYLHFIANIPVKGTRWLYSSKPYALA
HHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEE
TPPLSVINQWQQALDKGQLPTFVAGLAPQHPQYAVMHESLLALLSDTKPWPQLTGKATLR
CCCHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEC
PGQWSNDVPALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTT
CCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCEECCCEEEEEECCCCCCCCHHC
SRSKPAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHCCEEEEEHH
RLRLLPTELSTGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPP
HHHEEHHHCCCCEEEECCCEEEEEEECCCEEECCEEEEECCCCCCHHHHHHHCCEEECCC
WNVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQ
CCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCEEEE
QAPGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQD
CCCCCCCCCCCEEECCCCCCEEEEECCCCCCHHHHHHHHHHHCCEEECCHHHHHHHHHHH
AGWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYDLPARSSS
CCCCHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEEECCCCCCEEEHEEECCCCCCCCHH
QIVSKAEQLIR
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]