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The map label for this gene is deoB

Identifier: 209399462

GI number: 209399462

Start: 5551069

End: 5552292

Strand: Direct

Name: deoB

Synonym: ECH74115_5898

Alternate gene names: 209399462

Gene position: 5551069-5552292 (Clockwise)

Preceding gene: 209398702

Following gene: 209400497

Centisome position: 99.62

GC content: 54.41

Gene sequence:

>1224_bases
ATGAAACGTGCATTTATTATGGTGCTGGACTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGG
GGCTGACACCCTGGGTCATATCGCAGAAGCTTGTGCCAAAGGCGAAGCTGATAACGGTCGTAAAGGCCCGCTCAATCTGC
CAAATCTGACCCGTCTGGGGCTGGCGAAAGCACACGAAGGTTCTACCGGTTTCATTCCGGCGGGAATGGACGGCAACGCT
GAAGTTATCGGCGCGTACGCATGGGCGCACGAAATGTCATCCGGTAAAGATACCCCGTCTGGTCACTGGGAAATTGCCGG
TGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATAAACTGGTCG
AACGCGCTAATCTGCCGGGTTACCTCGGTAACTGCCACTCTTCCGGTACGGTCATTCTGGATCAACTGGGCGAAGAGCAC
ATGAAAACCGGCAAGCCGATTTTCTATACCTCCGCTGACTCCGTGTTCCAGATTGCCTGCCATGAAGAAACTTTCGGTCT
GGATAAACTCTACGAACTGTGCGAAATCGCCCGTGAAGAGCTGACCAACGGCGGCTACAATATCGGTCGTGTTATCGCTC
GTCCGTTTATCGGCGACAAAGCCGGTAACTTCCAGCGTACCGGTAACCGTCACGACCTGGCTGTTGAGCCGCCAGCACCG
ACCGTGCTGCAGAAACTGGTTGATGAAAAACACGGCCAGGTGGTTTCGGTCGGTAAAATTGCAGACATCTACGCCAACTG
CGGTATCACCAAAAAAGTGAAAGCGACTGGCCTGGACGCGCTGTTTGACGCCACCATCAAAGAGATGAAAGAAGCGGGTG
ATAACACCATCGTCTTCACCAACTTCGTTGACTTCGACTCTTCCTGGGGCCACCGTCGCGACGTCGCCGGTTATGCTGCG
GGTCTGGAACTGTTCGACCGCCGTCTGCCGGAGCTGATGTCTCTGCTGCGCGATGACGACATCCTGATCCTCACCGCTGA
CCACGGCTGTGATCCGACCTGGACCGGTACTGACCACACGCGTGAACACATTCCGGTACTGGTTTACGGCCCGAAAGTAA
AACCGGGCTCACTGGGTCACCGTGAAACCTTCGCGGATATCGGCCAGACTCTGGCAAAATATTTTGGTACTTCTGATATG
GAATATGGCAAAGCCATGTTCTGA

Upstream 100 bases:

>100_bases
TAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAA
GCACTGAGTACGGAGAACAT

Downstream 100 bases:

>100_bases
TGGATTTGGGCGGAGCGTTGACTCCGCCTTTGTTATGTCACAAAAAGGATAAAACAATGGCTACCCCACACATTAATGCA
GAAATGGGCGATTTCGCTGA

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MKRAFIMVLDSFGIGATEDAERFGDVGADTLGHIAEACAKGEADNGRKGPLNLPNLTRLGLAKAHEGSTGFIPAGMDGNA
EVIGAYAWAHEMSSGKDTPSGHWEIAGVPVLFEWGYFSDHENSFPQELLDKLVERANLPGYLGNCHSSGTVILDQLGEEH
MKTGKPIFYTSADSVFQIACHEETFGLDKLYELCEIAREELTNGGYNIGRVIARPFIGDKAGNFQRTGNRHDLAVEPPAP
TVLQKLVDEKHGQVVSVGKIADIYANCGITKKVKATGLDALFDATIKEMKEAGDNTIVFTNFVDFDSSWGHRRDVAGYAA
GLELFDRRLPELMSLLRDDDILILTADHGCDPTWTGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTLAKYFGTSDM
EYGKAMF

Sequences:

>Translated_407_residues
MKRAFIMVLDSFGIGATEDAERFGDVGADTLGHIAEACAKGEADNGRKGPLNLPNLTRLGLAKAHEGSTGFIPAGMDGNA
EVIGAYAWAHEMSSGKDTPSGHWEIAGVPVLFEWGYFSDHENSFPQELLDKLVERANLPGYLGNCHSSGTVILDQLGEEH
MKTGKPIFYTSADSVFQIACHEETFGLDKLYELCEIAREELTNGGYNIGRVIARPFIGDKAGNFQRTGNRHDLAVEPPAP
TVLQKLVDEKHGQVVSVGKIADIYANCGITKKVKATGLDALFDATIKEMKEAGDNTIVFTNFVDFDSSWGHRRDVAGYAA
GLELFDRRLPELMSLLRDDDILILTADHGCDPTWTGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTLAKYFGTSDM
EYGKAMF
>Mature_407_residues
MKRAFIMVLDSFGIGATEDAERFGDVGADTLGHIAEACAKGEADNGRKGPLNLPNLTRLGLAKAHEGSTGFIPAGMDGNA
EVIGAYAWAHEMSSGKDTPSGHWEIAGVPVLFEWGYFSDHENSFPQELLDKLVERANLPGYLGNCHSSGTVILDQLGEEH
MKTGKPIFYTSADSVFQIACHEETFGLDKLYELCEIAREELTNGGYNIGRVIARPFIGDKAGNFQRTGNRHDLAVEPPAP
TVLQKLVDEKHGQVVSVGKIADIYANCGITKKVKATGLDALFDATIKEMKEAGDNTIVFTNFVDFDSSWGHRRDVAGYAA
GLELFDRRLPELMSLLRDDDILILTADHGCDPTWTGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTLAKYFGTSDM
EYGKAMF

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family

Homologues:

Organism=Escherichia coli, GI1790843, Length=407, Percent_Identity=100, Blast_Score=842, Evalue=0.0,
Organism=Escherichia coli, GI1789781, Length=442, Percent_Identity=28.9592760180996, Blast_Score=113, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOB_ECO24 (A7ZVS6)

Other databases:

- EMBL:   CP000800
- RefSeq:   YP_001465905.1
- ProteinModelPortal:   A7ZVS6
- SMR:   A7ZVS6
- STRING:   A7ZVS6
- PRIDE:   A7ZVS6
- EnsemblBacteria:   EBESCT00000020497
- GeneID:   5587262
- GenomeReviews:   CP000800_GR
- KEGG:   ecw:EcE24377A_4982
- eggNOG:   COG1015
- GeneTree:   EBGT00050000010580
- HOGENOM:   HBG644230
- OMA:   CHASGTE
- ProtClustDB:   PRK05362
- BioCyc:   ECOL331111:ECE24377A_4982-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00740
- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124
- Gene3D:   G3DSA:3.40.720.10
- PIRSF:   PIRSF001491
- TIGRFAMs:   TIGR01696

Pfam domain/function: PF01676 Metalloenzyme; SSF53649 Alkaline_phosphatase_core

EC number: =5.4.2.7

Molecular weight: Translated: 44370; Mature: 44370

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRAFIMVLDSFGIGATEDAERFGDVGADTLGHIAEACAKGEADNGRKGPLNLPNLTRLG
CCCEEEEEEECCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHC
LAKAHEGSTGFIPAGMDGNAEVIGAYAWAHEMSSGKDTPSGHWEIAGVPVLFEWGYFSDH
CHHCCCCCCCEEECCCCCCCEEEEHHHHHHHHCCCCCCCCCCEEEECCEEEEECCCCCCC
ENSFPQELLDKLVERANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTSADSVFQIAC
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHCHHHHHCCCCEEEECCCCEEEEEE
HEETFGLDKLYELCEIAREELTNGGYNIGRVIARPFIGDKAGNFQRTGNRHDLAVEPPAP
CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCH
TVLQKLVDEKHGQVVSVGKIADIYANCGITKKVKATGLDALFDATIKEMKEAGDNTIVFT
HHHHHHHHHHCCCEEEECHHHHHHHCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCEEEEE
NFVDFDSSWGHRRDVAGYAAGLELFDRRLPELMSLLRDDDILILTADHGCDPTWTGTDHT
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
REHIPVLVYGPKVKPGSLGHRETFADIGQTLAKYFGTSDMEYGKAMF
HHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKRAFIMVLDSFGIGATEDAERFGDVGADTLGHIAEACAKGEADNGRKGPLNLPNLTRLG
CCCEEEEEEECCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHC
LAKAHEGSTGFIPAGMDGNAEVIGAYAWAHEMSSGKDTPSGHWEIAGVPVLFEWGYFSDH
CHHCCCCCCCEEECCCCCCCEEEEHHHHHHHHCCCCCCCCCCEEEECCEEEEECCCCCCC
ENSFPQELLDKLVERANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTSADSVFQIAC
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHCHHHHHCCCCEEEECCCCEEEEEE
HEETFGLDKLYELCEIAREELTNGGYNIGRVIARPFIGDKAGNFQRTGNRHDLAVEPPAP
CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCH
TVLQKLVDEKHGQVVSVGKIADIYANCGITKKVKATGLDALFDATIKEMKEAGDNTIVFT
HHHHHHHHHHCCCEEEECHHHHHHHCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCEEEEE
NFVDFDSSWGHRRDVAGYAAGLELFDRRLPELMSLLRDDDILILTADHGCDPTWTGTDHT
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
REHIPVLVYGPKVKPGSLGHRETFADIGQTLAKYFGTSDMEYGKAMF
HHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA