Click here to switch to the map view.

The map label for this gene is 209399186

Identifier: 209399186

GI number: 209399186

Start: 4698078

End: 4699298

Strand: Direct

Name: 209399186

Synonym: ECH74115_5053

Alternate gene names: NA

Gene position: 4698078-4699298 (Clockwise)

Preceding gene: 209400345

Following gene: 209399488

Centisome position: 84.31

GC content: 39.23

Gene sequence:

>1221_bases
ATGTTATCCTCATATAAAATAAAACTTCTCAATGGTGCGATGCGTAATCGGGAATTACAACTTCCGATGGGAAACCTAAC
GCTAGGTACGGAAGATAACGATATTGTTTACTTTCCCCTTGAACAAGGCCTCAATCAGTTTTTACTTGATATACGTGAGG
AAGGTGTTTTCCTTTTATCTCCGGTTGAATTTTGGATTGATGGGCAACCCACGCCCTATGAAGCAGATAAACCATTACCT
GTCGGAAAGGTTATTGATATAGCGGGATGTTGCTTCATCATTGGTGATATTGACCATTCCTTGCCATTGTCTGATGTGCC
AGAAAGGTTCTCTGCCAAAAGTCGACGCAAAAAACGCCTTATCCTGGCGAGCGTGATTGGTGCTACTTTTGCGTTGTCTG
GTGCCATCGGCAGTTACGTTTTGCTTTCCCCAAAAGCTGAACCCCCAACGTTTACCAGAGCTGATGTATATCAGCAGCTA
AAAGAAAACAAACTTCATGCAATCACTCTGGTATGGCATGGGAAAAATATCGCGCTTTATGGGCGTTGCGAATCAACCAC
GGATTTAACTCCATTTTTTAATTACCTAAAAGAAAAAAATATTTTTTATTACAATAATATCATTTGCAATAACCAAATCA
TATCCGCAATTAATGATGTCTTAACGGAATACGGTTACAAAGATATCATTATTACAAAAGGTAATAAGCCTGGATTCTTT
CTGTTATCGGGATACATTCCCCCTTCACCCAAATGGAGCGAGGTTGAAAATCTGTTACTGAATACGCCAGGAGTTGCAGG
ATGGGAAATACACAACAACAGTAACAATAAAATCAATGAACTGGCATCAGAGTTTAAAAAGAATAAACTAATAAACTATG
TCAATATTTTCAAAAAGAATGATGTCATCATTGTTGCGGGGGAAGTTTCTCAACAGAATGAGAGTAAGATCCTTGCCATT
ATAAATGCAATGAACAAAAATAGTAACGCCAAGATACTCTTTCAGAACATTCAGCCGTACATTTCAGCAGATATTTTCCC
CGGAAAAATACTCAGAATCAGCGGTACGATGAAGAATCCAACAATTGCTCTTGATAATGGCACCAGCCTGGGGATTGGTA
GCATTCTGAAAGGAGGCTATGTCATAGACGCGATTGATCCTAAAGATGGTATCAACATCTCCCGCCCAGACGAATATATA
CATATTCCACTGTCGTATTAA

Upstream 100 bases:

>100_bases
AGTACTGTACAACAGCTTCCTTTCTACTCTATTCTTAGACGATGTAAGTTCACCATATTTTTTCTCATTGTTCAACCACC
AGGATGAATAAAATTTAAAA

Downstream 100 bases:

>100_bases
TTTCTTATCCTCTTCCCCCTCTTCGGAGGGTTTTTTATTGTGTGGATGTTGTGAGCATAGTTGTTGCTTGATGTGATTCA
GCTTTGGTATCAGCGTGGTT

Product: type III secretion apparatus protein, YscD/HrpQ family

Products: NA

Alternate protein names: Type III Secretion Apparatus Protein; Type III Secretion Apparatus Protein YscD/HrpQ Family; YscD/HrpQ Family Type III Secretion Apparatus Protein; Pathogenicity Island Protein

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
MLSSYKIKLLNGAMRNRELQLPMGNLTLGTEDNDIVYFPLEQGLNQFLLDIREEGVFLLSPVEFWIDGQPTPYEADKPLP
VGKVIDIAGCCFIIGDIDHSLPLSDVPERFSAKSRRKKRLILASVIGATFALSGAIGSYVLLSPKAEPPTFTRADVYQQL
KENKLHAITLVWHGKNIALYGRCESTTDLTPFFNYLKEKNIFYYNNIICNNQIISAINDVLTEYGYKDIIITKGNKPGFF
LLSGYIPPSPKWSEVENLLLNTPGVAGWEIHNNSNNKINELASEFKKNKLINYVNIFKKNDVIIVAGEVSQQNESKILAI
INAMNKNSNAKILFQNIQPYISADIFPGKILRISGTMKNPTIALDNGTSLGIGSILKGGYVIDAIDPKDGINISRPDEYI
HIPLSY

Sequences:

>Translated_406_residues
MLSSYKIKLLNGAMRNRELQLPMGNLTLGTEDNDIVYFPLEQGLNQFLLDIREEGVFLLSPVEFWIDGQPTPYEADKPLP
VGKVIDIAGCCFIIGDIDHSLPLSDVPERFSAKSRRKKRLILASVIGATFALSGAIGSYVLLSPKAEPPTFTRADVYQQL
KENKLHAITLVWHGKNIALYGRCESTTDLTPFFNYLKEKNIFYYNNIICNNQIISAINDVLTEYGYKDIIITKGNKPGFF
LLSGYIPPSPKWSEVENLLLNTPGVAGWEIHNNSNNKINELASEFKKNKLINYVNIFKKNDVIIVAGEVSQQNESKILAI
INAMNKNSNAKILFQNIQPYISADIFPGKILRISGTMKNPTIALDNGTSLGIGSILKGGYVIDAIDPKDGINISRPDEYI
HIPLSY
>Mature_406_residues
MLSSYKIKLLNGAMRNRELQLPMGNLTLGTEDNDIVYFPLEQGLNQFLLDIREEGVFLLSPVEFWIDGQPTPYEADKPLP
VGKVIDIAGCCFIIGDIDHSLPLSDVPERFSAKSRRKKRLILASVIGATFALSGAIGSYVLLSPKAEPPTFTRADVYQQL
KENKLHAITLVWHGKNIALYGRCESTTDLTPFFNYLKEKNIFYYNNIICNNQIISAINDVLTEYGYKDIIITKGNKPGFF
LLSGYIPPSPKWSEVENLLLNTPGVAGWEIHNNSNNKINELASEFKKNKLINYVNIFKKNDVIIVAGEVSQQNESKILAI
INAMNKNSNAKILFQNIQPYISADIFPGKILRISGTMKNPTIALDNGTSLGIGSILKGGYVIDAIDPKDGINISRPDEYI
HIPLSY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45260; Mature: 45260

Theoretical pI: Translated: 7.49; Mature: 7.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSSYKIKLLNGAMRNRELQLPMGNLTLGTEDNDIVYFPLEQGLNQFLLDIREEGVFLLS
CCCCEEEEEECCHHCCCEEECCCCCEEECCCCCCEEEEEHHHCHHHHHHHHHHCCEEEEE
PVEFWIDGQPTPYEADKPLPVGKVIDIAGCCFIIGDIDHSLPLSDVPERFSAKSRRKKRL
CEEEEECCCCCCCCCCCCCCCCHHHHHCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
ILASVIGATFALSGAIGSYVLLSPKAEPPTFTRADVYQQLKENKLHAITLVWHGKNIALY
HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCEEEEEEEEECCEEEEE
GRCESTTDLTPFFNYLKEKNIFYYNNIICNNQIISAINDVLTEYGYKDIIITKGNKPGFF
EECCCCCCCHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHHHHCCCCEEEEECCCCCCEE
LLSGYIPPSPKWSEVENLLLNTPGVAGWEIHNNSNNKINELASEFKKNKLINYVNIFKKN
EEECCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECC
DVIIVAGEVSQQNESKILAIINAMNKNSNAKILFQNIQPYISADIFPGKILRISGTMKNP
CEEEEECCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCEECCCCCCEEEEEECCCCCC
TIALDNGTSLGIGSILKGGYVIDAIDPKDGINISRPDEYIHIPLSY
EEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEEECC
>Mature Secondary Structure
MLSSYKIKLLNGAMRNRELQLPMGNLTLGTEDNDIVYFPLEQGLNQFLLDIREEGVFLLS
CCCCEEEEEECCHHCCCEEECCCCCEEECCCCCCEEEEEHHHCHHHHHHHHHHCCEEEEE
PVEFWIDGQPTPYEADKPLPVGKVIDIAGCCFIIGDIDHSLPLSDVPERFSAKSRRKKRL
CEEEEECCCCCCCCCCCCCCCCHHHHHCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
ILASVIGATFALSGAIGSYVLLSPKAEPPTFTRADVYQQLKENKLHAITLVWHGKNIALY
HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCEEEEEEEEECCEEEEE
GRCESTTDLTPFFNYLKEKNIFYYNNIICNNQIISAINDVLTEYGYKDIIITKGNKPGFF
EECCCCCCCHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHHHHCCCCEEEEECCCCCCEE
LLSGYIPPSPKWSEVENLLLNTPGVAGWEIHNNSNNKINELASEFKKNKLINYVNIFKKN
EEECCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECC
DVIIVAGEVSQQNESKILAIINAMNKNSNAKILFQNIQPYISADIFPGKILRISGTMKNP
CEEEEECCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCEECCCCCCEEEEEECCCCCC
TIALDNGTSLGIGSILKGGYVIDAIDPKDGINISRPDEYIHIPLSY
EEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA