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The map label for this gene is lomR [H]

Identifier: 209398994

GI number: 209398994

Start: 1211771

End: 1212370

Strand: Direct

Name: lomR [H]

Synonym: ECH74115_1202

Alternate gene names: 209398994

Gene position: 1211771-1212370 (Clockwise)

Preceding gene: 209397821

Following gene: 209400674

Centisome position: 21.75

GC content: 55.33

Gene sequence:

>600_bases
ATGCGTAAACTTTATGCCGCCATTTTGTCCGCAGCCATTTGTCTGGCCGTATCCGGTGCGCCTGCATGGGCGTCTGAACA
TCAGTCAACGCTGAGCGCGGGGTATCTTCATGTCTCGACGAACGTTCCTGGCAGCGATGAACTGAACGGGATTAACGTGA
AATACCGTTATGAGTTTACGGACACACTGGGGATGGTGACGTCGTTCAGCTATGCAGGAGACAAGAATCGCCAGCTGACC
CGTTACAGCGATACCCGCTGGCATGAAGATTCCGTTCGTAACCGCTGGTTCAGCGTAATGGCGGGGCCGTCTGTGCGCGT
GAATGAATGGTTCAGCGCGTATGCGATGGCGGGTGTGGCTTACAGCCGTGTGTCGACTTTCTCCGGGGATTATCTCCGCG
TAACTGACAACAAGGGGAAAACGCATGATGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGG
GGAGCTGGCGTGCAGTTTAACCCGATCGAATCCGTGGCCATTGATATTGCTTATGAAGGCTCCGGCAGTGGCGACTGGCG
CACTGACGGCTTCATCGTGGGTGTCGGCTATAAATTCTGA

Upstream 100 bases:

>100_bases
AAGAAAGCCACCGCAGGCATCAGTATCAGCTGAATTTTATAACCCATATACGGGCGCCAGAAATGGCGCCTTTTTTATTG
CAGAAAAGCGAGAGGTAATT

Downstream 100 bases:

>100_bases
TTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTC
AGGTGTACTGAAAGACGGCA

Product: Ail/Lom family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MRKLYAAILSAAICLAVSGAPAWASEHQSTLSAGYLHVSTNVPGSDELNGINVKYRYEFTDTLGMVTSFSYAGDKNRQLT
RYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAW
GAGVQFNPIESVAIDIAYEGSGSGDWRTDGFIVGVGYKF

Sequences:

>Translated_199_residues
MRKLYAAILSAAICLAVSGAPAWASEHQSTLSAGYLHVSTNVPGSDELNGINVKYRYEFTDTLGMVTSFSYAGDKNRQLT
RYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAW
GAGVQFNPIESVAIDIAYEGSGSGDWRTDGFIVGVGYKF
>Mature_199_residues
MRKLYAAILSAAICLAVSGAPAWASEHQSTLSAGYLHVSTNVPGSDELNGINVKYRYEFTDTLGMVTSFSYAGDKNRQLT
RYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAW
GAGVQFNPIESVAIDIAYEGSGSGDWRTDGFIVGVGYKF

Specific function: Unknown

COG id: COG3637

COG function: function code M; Opacity protein and related surface antigens

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ail/ompX/pagC/lom family [H]

Homologues:

Organism=Escherichia coli, GI1787034, Length=201, Percent_Identity=32.3383084577114, Blast_Score=90, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000758
- InterPro:   IPR011250 [H]

Pfam domain/function: PF06316 Ail_Lom [H]

EC number: NA

Molecular weight: Translated: 21795; Mature: 21795

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS00694 ENT_VIR_OMP_1 ; PS00695 ENT_VIR_OMP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKLYAAILSAAICLAVSGAPAWASEHQSTLSAGYLHVSTNVPGSDELNGINVKYRYEFT
CHHHHHHHHHHHHHHEECCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEEEEEC
DTLGMVTSFSYAGDKNRQLTRYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGVA
CHHHHHHEEECCCCCCCEEEECCCCCCCHHHHHHHEEEEECCCCEEHHHHHHHHHHHHHH
YSRVSTFSGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAWGAGVQFNPIESVAIDIAYEG
HHHHHHCCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEECCCCEECCCCEEEEEEEEEC
SGSGDWRTDGFIVGVGYKF
CCCCCCCCCCEEEEECCCC
>Mature Secondary Structure
MRKLYAAILSAAICLAVSGAPAWASEHQSTLSAGYLHVSTNVPGSDELNGINVKYRYEFT
CHHHHHHHHHHHHHHEECCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEEEEEC
DTLGMVTSFSYAGDKNRQLTRYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGVA
CHHHHHHEEECCCCCCCEEEECCCCCCCHHHHHHHEEEEECCCCEEHHHHHHHHHHHHHH
YSRVSTFSGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAWGAGVQFNPIESVAIDIAYEG
HHHHHHCCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEECCCCEECCCCEEEEEEEEEC
SGSGDWRTDGFIVGVGYKF
CCCCCCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]