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The map label for this gene is ygaU [H]

Identifier: 209398904

GI number: 209398904

Start: 3622760

End: 3623209

Strand: Reverse

Name: ygaU [H]

Synonym: ECH74115_3907

Alternate gene names: 209398904

Gene position: 3623209-3622760 (Counterclockwise)

Preceding gene: 209397884

Following gene: 209399175

Centisome position: 65.02

GC content: 48.0

Gene sequence:

>450_bases
ATGGGTCTGTTCAATTTTGTGAAAGATGCCGGAGAAAAACTCTGGGACGCGGTTACAGGTCAGCACGATAAAGATGATCA
GGCGAAGAAGGTGCAGGAGCATCTGAGCAAAACCGGTATACCTGATGCCGATAAAGTGAACATTCAAATTGCCGATGGCA
AAGCGACGGTCACTGGTGACGGCCTGAGTCAGGAGGCGAAGGAGAAAATCCTTGTTGCGGTGGGGAATATTTCCGGTATT
GCCAGTGTTGATGATCAGGTGAAAACGGCGACACCAGCCACTGCCAGCCAGTTTTATACCGTTAAGTCTGGCGACACTCT
GAGTGCCATTTCCAAACAGGTCTACGGTAACGCTAATCTGTACAATAAAATCTTCGAAGCGAATAAACCGATGCTAAAAA
GCCCGGATAAAATTTATCCGGGGCAAGTGTTGCGTATTCCGGAAGAGTAG

Upstream 100 bases:

>100_bases
TGCAAACCCGCGATTAAACCTGTGCTCATCCCCGCGGCGTTAACGCGCCGCGTTCCTCTACTACACTTTCTGAGTGTTTC
CGTTAACGAATGAGGTAGCT

Downstream 100 bases:

>100_bases
TTAATTGCCAGCCATCGCCTGCTGGATAATGGGAATTGGCGTCAGTAAATGCTGGCGCATTAACTCACTGGCGCGCGCGG
TATCTCGCGCCAGTACCGCC

Product: LysM domain/BON superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MGLFNFVKDAGEKLWDAVTGQHDKDDQAKKVQEHLSKTGIPDADKVNIQIADGKATVTGDGLSQEAKEKILVAVGNISGI
ASVDDQVKTATPATASQFYTVKSGDTLSAISKQVYGNANLYNKIFEANKPMLKSPDKIYPGQVLRIPEE

Sequences:

>Translated_149_residues
MGLFNFVKDAGEKLWDAVTGQHDKDDQAKKVQEHLSKTGIPDADKVNIQIADGKATVTGDGLSQEAKEKILVAVGNISGI
ASVDDQVKTATPATASQFYTVKSGDTLSAISKQVYGNANLYNKIFEANKPMLKSPDKIYPGQVLRIPEE
>Mature_148_residues
GLFNFVKDAGEKLWDAVTGQHDKDDQAKKVQEHLSKTGIPDADKVNIQIADGKATVTGDGLSQEAKEKILVAVGNISGIA
SVDDQVKTATPATASQFYTVKSGDTLSAISKQVYGNANLYNKIFEANKPMLKSPDKIYPGQVLRIPEE

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789019, Length=149, Percent_Identity=99.3288590604027, Blast_Score=301, Evalue=2e-83,

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR007055
- InterPro:   IPR014004 [H]

Pfam domain/function: PF04972 BON; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 16036; Mature: 15905

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: PS50914 BON

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLFNFVKDAGEKLWDAVTGQHDKDDQAKKVQEHLSKTGIPDADKVNIQIADGKATVTGD
CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCEEEEECC
GLSQEAKEKILVAVGNISGIASVDDQVKTATPATASQFYTVKSGDTLSAISKQVYGNANL
CCCHHHHHEEEEEECCCCCCCCCCCCHHCCCCCCCHHEEEECCCCHHHHHHHHHCCCCHH
YNKIFEANKPMLKSPDKIYPGQVLRIPEE
HHHHHHCCCCCCCCCCCCCCCCEEECCCC
>Mature Secondary Structure 
GLFNFVKDAGEKLWDAVTGQHDKDDQAKKVQEHLSKTGIPDADKVNIQIADGKATVTGD
CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCEEEEECC
GLSQEAKEKILVAVGNISGIASVDDQVKTATPATASQFYTVKSGDTLSAISKQVYGNANL
CCCHHHHHEEEEEECCCCCCCCCCCCHHCCCCCCCHHEEEECCCCHHHHHHHHHCCCCHH
YNKIFEANKPMLKSPDKIYPGQVLRIPEE
HHHHHHCCCCCCCCCCCCCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]