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The map label for this gene is ycdU [H]

Identifier: 209397279

GI number: 209397279

Start: 1311550

End: 1312536

Strand: Direct

Name: ycdU [H]

Synonym: ECH74115_1297

Alternate gene names: 209397279

Gene position: 1311550-1312536 (Clockwise)

Preceding gene: 209397987

Following gene: 209398563

Centisome position: 23.54

GC content: 40.63

Gene sequence:

>987_bases
ATGATTCCTGATTATTTAACTTTTATTCGCTTTCAGGATAAACGAAGTCTGATATACATTTATGCTATTGGACTTATTCT
GATAGGCTTTTATTGGAAAAATGCAGGATTTACTTTTCCATCAGAGGATATTGGTGTCGTTAGTGGGATTCTGGCCCTGG
TGCTGTATAATTTTATTTTTGATCTCAAGGCGTACTGGGCTTATAAATGCGTCACGAAGAATATCGATTTTTCGTGGTTT
AAGAAAAAGCAGAACCACAAAATAGAATTATTTCTTACGCAACCTCTGGTGGCAGGATTTCTGTCGTTAATCATGTTGAG
TGCAATGAGTTGGGGGCTATACCAGCGTCTACCCTCGTTATATGCGCTGTTCCTGATTTCGTTACTTGGGCCGTTGGTTA
TCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCGAAAAAAGTAAAATATAAA
AGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAG
TGATTCTTTTGTGATAGAGGGGCAGTGGTTAACGTTTAAATCGATAATTGCATTGCTCATTCTTTGTGGCGTAGTGTTGG
CGATTAATCTGTTTTTTCTGCGCTTCTCCAGGCGGTACGCTTTTTTGGGCAGGCTTTTTTTGCAGGAAATCGATCTCTTT
TTCTCCAGTGAAAATGCATTGTCGACCTTTTTTGCCAAGCCGCTTTGGCTTCGGTTATTCATATTGCTGGTTATTGAAGT
GATGTGGATTACGCTGGTGTCGGTATTGGCAACGCTTGTGGAATGGCGGATTTGGTTTGAAGCCTATTTTTTACTCTGCT
ATGTACCGTGCTTAATTTACTATTTTTTCTATTGTCGATTCCTCTGGCATAACGATTTTATGATGGCATGTGACATGTAT
TTCCGTTGGGGGCATTTTAATAAGTGA

Upstream 100 bases:

>100_bases
ATAAGCCCTATTTGGGGAATATGTTCAACGATTTCGCTGGCGTGGATCAGCAACGAGTTATGCATTGTCGTAAAGCATTT
AGTGATGCGAAGGTATTCAA

Downstream 100 bases:

>100_bases
GGAAGTGATAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGCAACCAG
ACAGTTGATGTGCACGATTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MIPDYLTFIRFQDKRSLIYIYAIGLILIGFYWKNAGFTFPSEDIGVVSGILALVLYNFIFDLKAYWAYKCVTKNIDFSWF
KKKQNHKIELFLTQPLVAGFLSLIMLSAMSWGLYQRLPSLYALFLISLLGPLVIFLLFRMIRTSYVKQVAISVAKKVKYK
SLTRYVLLSVCISTVVNLLTISPLRNSDSFVIEGQWLTFKSIIALLILCGVVLAINLFFLRFSRRYAFLGRLFLQEIDLF
FSSENALSTFFAKPLWLRLFILLVIEVMWITLVSVLATLVEWRIWFEAYFLLCYVPCLIYYFFYCRFLWHNDFMMACDMY
FRWGHFNK

Sequences:

>Translated_328_residues
MIPDYLTFIRFQDKRSLIYIYAIGLILIGFYWKNAGFTFPSEDIGVVSGILALVLYNFIFDLKAYWAYKCVTKNIDFSWF
KKKQNHKIELFLTQPLVAGFLSLIMLSAMSWGLYQRLPSLYALFLISLLGPLVIFLLFRMIRTSYVKQVAISVAKKVKYK
SLTRYVLLSVCISTVVNLLTISPLRNSDSFVIEGQWLTFKSIIALLILCGVVLAINLFFLRFSRRYAFLGRLFLQEIDLF
FSSENALSTFFAKPLWLRLFILLVIEVMWITLVSVLATLVEWRIWFEAYFLLCYVPCLIYYFFYCRFLWHNDFMMACDMY
FRWGHFNK
>Mature_328_residues
MIPDYLTFIRFQDKRSLIYIYAIGLILIGFYWKNAGFTFPSEDIGVVSGILALVLYNFIFDLKAYWAYKCVTKNIDFSWF
KKKQNHKIELFLTQPLVAGFLSLIMLSAMSWGLYQRLPSLYALFLISLLGPLVIFLLFRMIRTSYVKQVAISVAKKVKYK
SLTRYVLLSVCISTVVNLLTISPLRNSDSFVIEGQWLTFKSIIALLILCGVVLAINLFFLRFSRRYAFLGRLFLQEIDLF
FSSENALSTFFAKPLWLRLFILLVIEVMWITLVSVLATLVEWRIWFEAYFLLCYVPCLIYYFFYCRFLWHNDFMMACDMY
FRWGHFNK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787267, Length=328, Percent_Identity=98.780487804878, Blast_Score=649, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38725; Mature: 38725

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPDYLTFIRFQDKRSLIYIYAIGLILIGFYWKNAGFTFPSEDIGVVSGILALVLYNFIF
CCCHHHHHHEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
DLKAYWAYKCVTKNIDFSWFKKKQNHKIELFLTQPLVAGFLSLIMLSAMSWGLYQRLPSL
HHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
YALFLISLLGPLVIFLLFRMIRTSYVKQVAISVAKKVKYKSLTRYVLLSVCISTVVNLLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISPLRNSDSFVIEGQWLTFKSIIALLILCGVVLAINLFFLRFSRRYAFLGRLFLQEIDLF
HCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSSENALSTFFAKPLWLRLFILLVIEVMWITLVSVLATLVEWRIWFEAYFLLCYVPCLIY
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YFFYCRFLWHNDFMMACDMYFRWGHFNK
HHHHHHHHHCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MIPDYLTFIRFQDKRSLIYIYAIGLILIGFYWKNAGFTFPSEDIGVVSGILALVLYNFIF
CCCHHHHHHEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
DLKAYWAYKCVTKNIDFSWFKKKQNHKIELFLTQPLVAGFLSLIMLSAMSWGLYQRLPSL
HHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
YALFLISLLGPLVIFLLFRMIRTSYVKQVAISVAKKVKYKSLTRYVLLSVCISTVVNLLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISPLRNSDSFVIEGQWLTFKSIIALLILCGVVLAINLFFLRFSRRYAFLGRLFLQEIDLF
HCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSSENALSTFFAKPLWLRLFILLVIEVMWITLVSVLATLVEWRIWFEAYFLLCYVPCLIY
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YFFYCRFLWHNDFMMACDMYFRWGHFNK
HHHHHHHHHCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]