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The map label for this gene is yggR [H]

Identifier: 209396613

GI number: 209396613

Start: 3940003

End: 3941028

Strand: Reverse

Name: yggR [H]

Synonym: ECH74115_4253

Alternate gene names: 209396613

Gene position: 3941028-3940003 (Counterclockwise)

Preceding gene: 209397826

Following gene: 209397594

Centisome position: 70.73

GC content: 54.58

Gene sequence:

>1026_bases
GTGCCAGGTTATGCGCAATATCGTTCATTTTCCGAGGATCTTAGTATGAATATGGAAGAAATTGTGGCCCTTAGTGTAAA
GCATAACGTCTCGGATCTACACCTGTGCAGCGCCTGGCCCGCACGATGGCGCATTCGCGGGCTAATGGAAGCTGCGCCGT
TTGATGCGCCGGACGTCGAAGAGCTACTGCGGGAGTGGCTGGATGACGATCAGCGGGCAATATTGCTGGAGAATGGTCAG
CTGGATTTTGCCGTGTCGCTGACGGAAAACCAGCGATTGCGTGGCAGCGCATTCGCGCAACGGCATGGCATTTCGCTGGC
GTTACGGCTGTTACCTTCGCACTGCCCGCAGCTCGAACAGCTTGGCACACCACCGATATTGCCGGAGTTACTCAAGAGCG
AGAATGGCTTGATTCTGGTGACGGGGGCGACGGGGAGTGGCAAATCTACCACGCTGGCGGCGATGGTTGGTTATCTCAAT
CAACATGCTGATGCGCATATTCTGACGCTGGAAGATCCTGTGGAATATCTCTATGCCAGCCAGCGATGTTTGATCCAGCA
GCGGGAAATCGGTTTGCATTGTATGACGTTCGCATCGGGATTGCGGGCCGCATTGCGGGAAGATCCTGATGTGATTTTGC
TCGGAGAGCTGCGTGACAGCGAGACAATCCGTCTGGCGCTGACGGCGGCAGAAACCGGGCATCTGGTGCTGGCAACCTTA
CATACACGTGGTGCCGCGCAGGCAGTTGAGCGACTTGTGGATTCATTTCCGGCGCAGGAAAAAGACCCCGTGCGTAATCA
ACTGGCAGGTAGTTTACGGGCAGTGCTGTCACAAAAGCTGGAAGTGGATAAACAGGAAGGACGCGTGGCGCTATTTGAAT
TGCTGATTAACACACCTGCGGTGGGGAATTTGATTCGCGAAGGGAAAACCCACCAGTTACCGCATGTTATTCAAACTGGG
CAACAGGTGGGGATGATAACGTTTCAGCAGAGTTATCAGCAGCGGGTGGGGGAAGGGCGTTTGTGA

Upstream 100 bases:

>100_bases
ATGGCGCTCGCAGGTTTTGTTTTACTGACTGCAAGCAGCGTAATTTCTTCTGGAGAACGGCCGCAACGCGTTGCAGCCGC
TGAGATTTTGTCCCGGACCT

Downstream 100 bases:

>100_bases
CGTTGCCATGCCCGATGCGCAAGCTTATCGGGCCTACAAAGGCAATAAACGTCTGATGCGACGCTTGCGCGTCTTATCAG
ACCTACAACCGCTGCCACAT

Product: twitching motility family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MPGYAQYRSFSEDLSMNMEEIVALSVKHNVSDLHLCSAWPARWRIRGLMEAAPFDAPDVEELLREWLDDDQRAILLENGQ
LDFAVSLTENQRLRGSAFAQRHGISLALRLLPSHCPQLEQLGTPPILPELLKSENGLILVTGATGSGKSTTLAAMVGYLN
QHADAHILTLEDPVEYLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATL
HTRGAAQAVERLVDSFPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTG
QQVGMITFQQSYQQRVGEGRL

Sequences:

>Translated_341_residues
MPGYAQYRSFSEDLSMNMEEIVALSVKHNVSDLHLCSAWPARWRIRGLMEAAPFDAPDVEELLREWLDDDQRAILLENGQ
LDFAVSLTENQRLRGSAFAQRHGISLALRLLPSHCPQLEQLGTPPILPELLKSENGLILVTGATGSGKSTTLAAMVGYLN
QHADAHILTLEDPVEYLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATL
HTRGAAQAVERLVDSFPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTG
QQVGMITFQQSYQQRVGEGRL
>Mature_340_residues
PGYAQYRSFSEDLSMNMEEIVALSVKHNVSDLHLCSAWPARWRIRGLMEAAPFDAPDVEELLREWLDDDQRAILLENGQL
DFAVSLTENQRLRGSAFAQRHGISLALRLLPSHCPQLEQLGTPPILPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQ
HADAHILTLEDPVEYLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLH
TRGAAQAVERLVDSFPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQ
QVGMITFQQSYQQRVGEGRL

Specific function: Unknown

COG id: COG2805

COG function: function code NU; Tfp pilus assembly protein, pilus retraction ATPase PilT

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI87082188, Length=326, Percent_Identity=97.8527607361963, Blast_Score=648, Evalue=0.0,
Organism=Escherichia coli, GI1789723, Length=279, Percent_Identity=36.2007168458781, Blast_Score=126, Evalue=3e-30,
Organism=Escherichia coli, GI1786296, Length=272, Percent_Identity=36.0294117647059, Blast_Score=119, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006321
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 37716; Mature: 37584

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: PS00662 T2SP_E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGYAQYRSFSEDLSMNMEEIVALSVKHNVSDLHLCSAWPARWRIRGLMEAAPFDAPDVE
CCCHHHHHHHHHHHCCCHHHHHEEHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCHH
ELLREWLDDDQRAILLENGQLDFAVSLTENQRLRGSAFAQRHGISLALRLLPSHCPQLEQ
HHHHHHCCCCCEEEEEECCCEEEEEEECCCCCCCHHHHHHHHCHHHHHHHHHHCCCCHHH
LGTPPILPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVEYLYAS
CCCCCCCHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
QRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATL
HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEE
HTRGAAQAVERLVDSFPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPA
CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHCCCH
VGNLIREGKTHQLPHVIQTGQQVGMITFQQSYQQRVGEGRL
HHHHHHCCCCCCCCHHHHCCCHHCEEHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PGYAQYRSFSEDLSMNMEEIVALSVKHNVSDLHLCSAWPARWRIRGLMEAAPFDAPDVE
CCHHHHHHHHHHHCCCHHHHHEEHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCHH
ELLREWLDDDQRAILLENGQLDFAVSLTENQRLRGSAFAQRHGISLALRLLPSHCPQLEQ
HHHHHHCCCCCEEEEEECCCEEEEEEECCCCCCCHHHHHHHHCHHHHHHHHHHCCCCHHH
LGTPPILPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVEYLYAS
CCCCCCCHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
QRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATL
HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEE
HTRGAAQAVERLVDSFPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPA
CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHCCCH
VGNLIREGKTHQLPHVIQTGQQVGMITFQQSYQQRVGEGRL
HHHHHHCCCCCCCCHHHHCCCHHCEEHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]