Click here to switch to the map view.

The map label for this gene is rimM

Identifier: 209396490

GI number: 209396490

Start: 3569599

End: 3570150

Strand: Reverse

Name: rimM

Synonym: ECH74115_3847

Alternate gene names: 209396490

Gene position: 3570150-3569599 (Counterclockwise)

Preceding gene: 209395757

Following gene: 209400862

Centisome position: 64.07

GC content: 48.91

Gene sequence:

>552_bases
ATGATGAGCAAACAACTCACCGCGCAAGCACCTGTTGATCCCATCGTTTTGGGAAAAATGGGTTCGTCTTACGGTATTCG
TGGGTGGCTCAGAGTGTTTTCTTCCACCGAAGACGCCGAAAGCATTTTTGACTATCAGCCCTGGTTTATCCAGAAGGCGG
GTCAGTGGCAGCAAGTCCAGCTGGAAAGCTGGAAGCACCACAATCAGGACATGATCATCAAGCTGAAAGGCGTTGACGAT
CGTGATGCGGCGAACCTGCTGACGAATTGTGAAATTGTCGTGGATTCATCGCAGCTGCCTCAGCTTGAAGAGGGTGACTA
CTACTGGAAAGACCTGATGGGCTGCCAGGTAGTAACCACTGAAGGCTACGATCTCGGTAAAGTCGTCGATATGATGGAAA
CCGGATCCAATGACGTTCTCGTCATTAAGGCAAACCTGAAAGATGCGTTTGGTATCAAGGAACGTCTCGTACCGTTCCTC
GATGGGCAGGTTATCAAGAAAGTCGATCTCACTACTCGTTCAATCGAAGTAGATTGGGATCCTGGTTTTTAA

Upstream 100 bases:

>100_bases
TCGCATCGCTCACTGGGTTGGCCAGGGCGCAACTATTTCTGATCGCGTTGCTGCGCTGATCAAAGAAGTAAACAAAGCAG
CTTAATCTGTCACGGTGGTC

Downstream 100 bases:

>100_bases
ACCACCGGATAAACGGTAAAAGACGGCGCTATGTGGATTGGCATAATTAGCCTGTTTCCTGAAATGTTCCGCGCAATTAC
CGATTACGGGGTAACTGGCC

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MMSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLKGVDD
RDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFL
DGQVIKKVDLTTRSIEVDWDPGF

Sequences:

>Translated_183_residues
MMSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLKGVDD
RDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFL
DGQVIKKVDLTTRSIEVDWDPGF
>Mature_183_residues
MMSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLKGVDD
RDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFL
DGQVIKKVDLTTRSIEVDWDPGF

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=182, Percent_Identity=100, Blast_Score=374, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_SHIBS (Q31XD7)

Other databases:

- EMBL:   CP000036
- RefSeq:   YP_409099.2
- ProteinModelPortal:   Q31XD7
- SMR:   Q31XD7
- EnsemblBacteria:   EBESCT00000079854
- GeneID:   3781727
- GenomeReviews:   CP000036_GR
- KEGG:   sbo:SBO_2744
- GeneTree:   EBGT00050000011104
- HOGENOM:   HBG703775
- OMA:   AYGIRGW
- PhylomeDB:   Q31XD7
- ProtClustDB:   PRK00122
- BioCyc:   SBOY300268:SBO_2744-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 20737; Mature: 20737

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQ
CCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCHHHHHCCCCCEEECCCCCEEEE
LESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTT
EHHHCCCCCCEEEEEECCCCCCHHHHHCCCEEEECCCCCCCCCCCCCHHHHHCCCEEEEE
EGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD
CCCCHHHHHHHHHCCCCCEEEEEECCCCHHCHHHHHHHHCCCCEEEEEECEEEEEEEECC
PGF
CCC
>Mature Secondary Structure
MMSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQ
CCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCHHHHHCCCCCEEECCCCCEEEE
LESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTT
EHHHCCCCCCEEEEEECCCCCCHHHHHCCCEEEECCCCCCCCCCCCCHHHHHCCCEEEEE
EGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD
CCCCHHHHHHHHHCCCCCEEEEEECCCCHHCHHHHHHHHCCCCEEEEEECEEEEEEEECC
PGF
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA