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The map label for this gene is yjcO

Identifier: 209396005

GI number: 209396005

Start: 5224322

End: 5225011

Strand: Reverse

Name: yjcO

Synonym: ECH74115_5584

Alternate gene names: 209396005

Gene position: 5225011-5224322 (Counterclockwise)

Preceding gene: 209399819

Following gene: 209400399

Centisome position: 93.77

GC content: 49.57

Gene sequence:

>690_bases
ATGAAAAAAATTATCGCATTGATGTTGTTTTTGACATTCTTTGCCCACGCCAACGACTCCGAGCCTGGCAGCCAGTATTT
AAAGGCAGCAGAGGCCGGGGACCGACGCGCACAATATTTTCTTGCCGACAGCTGGTTTAGCTCCGGCGATTTGAGCAAAG
CCGAATATTGGGCACAGAAAGCCGCCGACAGCGGTGATGCTGATGCCTGCGCGCTGTTGGCGCAGATCAAAATCACCAAT
CCGGTCAGTCTGGACTATCCACAAGCAAAAGTTCTTGCAGAGAAAGCGGCGCAAGCGGGCAGTAAAGAAGGTGAAGTAAC
GCTGGCGCATATTCTGGTAAATACTCAAGCGGGTAAACCGGATTATCCAAAGGCGATTTCGCTGTTAGAAAACGCCTCGG
AAGATCTGGAGAACGACTCTGCCGTCGATGCCCAAATGCTGCTTGGTTTGATTTACGCCAACGGCGTGGGCATTAAGGCC
GACGATGACAAGGCAACCTGGTATTTCAAACGCAGCTCTGCAATTTCCCGAACCGGTTATTCCGAGTACTGGGCGGGAAT
GATGTTCTTAAACGGTGAAGAAGGTTTTATCGAGAAGAACAAGCAAAAGGCGCTGCACTGGTTGAACCTGAGCTGTATGG
AAGGGTTTGATACCGGGTGTGAAGAGTTTGAAAAATTAACTAACGGTTAA

Upstream 100 bases:

>100_bases
GGCGTAATACAGTCCTTTCTACAGCCTCCTTTCGGAGGCTGTTTTTTTATCCATTCGAACTCTTTATACTGGTTACTCCC
TACCCAATCGTATTATCAAA

Downstream 100 bases:

>100_bases
GGTAGGCCTGATAAGACGCGTTAAGCGTCGCATCAGGCGTTGATGTCGGATGCAGCGTAAACGCCTTATCAGACCTACAA
AATCACGCTAGCGCTGTCTG

Product: Sel1 repeat protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MKKIIALMLFLTFFAHANDSEPGSQYLKAAEAGDRRAQYFLADSWFSSGDLSKAEYWAQKAADSGDADACALLAQIKITN
PVSLDYPQAKVLAEKAAQAGSKEGEVTLAHILVNTQAGKPDYPKAISLLENASEDLENDSAVDAQMLLGLIYANGVGIKA
DDDKATWYFKRSSAISRTGYSEYWAGMMFLNGEEGFIEKNKQKALHWLNLSCMEGFDTGCEEFEKLTNG

Sequences:

>Translated_229_residues
MKKIIALMLFLTFFAHANDSEPGSQYLKAAEAGDRRAQYFLADSWFSSGDLSKAEYWAQKAADSGDADACALLAQIKITN
PVSLDYPQAKVLAEKAAQAGSKEGEVTLAHILVNTQAGKPDYPKAISLLENASEDLENDSAVDAQMLLGLIYANGVGIKA
DDDKATWYFKRSSAISRTGYSEYWAGMMFLNGEEGFIEKNKQKALHWLNLSCMEGFDTGCEEFEKLTNG
>Mature_229_residues
MKKIIALMLFLTFFAHANDSEPGSQYLKAAEAGDRRAQYFLADSWFSSGDLSKAEYWAQKAADSGDADACALLAQIKITN
PVSLDYPQAKVLAEKAAQAGSKEGEVTLAHILVNTQAGKPDYPKAISLLENASEDLENDSAVDAQMLLGLIYANGVGIKA
DDDKATWYFKRSSAISRTGYSEYWAGMMFLNGEEGFIEKNKQKALHWLNLSCMEGFDTGCEEFEKLTNG

Specific function: Unknown

COG id: COG0790

COG function: function code R; FOG: TPR repeat, SEL1 subfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790515, Length=229, Percent_Identity=100, Blast_Score=470, Evalue=1e-134,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YJCO_ECO57 (P0AF57)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   D91261
- PIR:   H86101
- RefSeq:   NP_290711.1
- RefSeq:   NP_313087.1
- ProteinModelPortal:   P0AF57
- SMR:   P0AF57
- EnsemblBacteria:   EBESCT00000025466
- EnsemblBacteria:   EBESCT00000060180
- GeneID:   914267
- GeneID:   960046
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z5677
- KEGG:   ecs:ECs5060
- GeneTree:   EBGT00050000008861
- HOGENOM:   HBG416857
- OMA:   KAADNGD
- ProtClustDB:   CLSK880841
- BioCyc:   ECOL83334:ECS5060-MONOMER
- GO:   GO:0005488
- InterPro:   IPR006597
- InterPro:   IPR011990
- Gene3D:   G3DSA:1.25.40.10
- SMART:   SM00671

Pfam domain/function: PF08238 Sel1

EC number: NA

Molecular weight: Translated: 25079; Mature: 25079

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIIALMLFLTFFAHANDSEPGSQYLKAAEAGDRRAQYFLADSWFSSGDLSKAEYWAQK
CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHEEEEECCCCCCCCCHHHHHHHHH
AADSGDADACALLAQIKITNPVSLDYPQAKVLAEKAAQAGSKEGEVTLAHILVNTQAGKP
HCCCCCHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCC
DYPKAISLLENASEDLENDSAVDAQMLLGLIYANGVGIKADDDKATWYFKRSSAISRTGY
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEECCCCEEEEEECCCHHHHCCC
SEYWAGMMFLNGEEGFIEKNKQKALHWLNLSCMEGFDTGCEEFEKLTNG
HHHHHEEEEECCCCCCHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
>Mature Secondary Structure
MKKIIALMLFLTFFAHANDSEPGSQYLKAAEAGDRRAQYFLADSWFSSGDLSKAEYWAQK
CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHEEEEECCCCCCCCCHHHHHHHHH
AADSGDADACALLAQIKITNPVSLDYPQAKVLAEKAAQAGSKEGEVTLAHILVNTQAGKP
HCCCCCHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCC
DYPKAISLLENASEDLENDSAVDAQMLLGLIYANGVGIKADDDKATWYFKRSSAISRTGY
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEECCCCEEEEEECCCHHHHCCC
SEYWAGMMFLNGEEGFIEKNKQKALHWLNLSCMEGFDTGCEEFEKLTNG
HHHHHEEEEECCCCCCHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796