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The map label for this gene is Ssh10b_2

Identifier: 20094525

GI number: 20094525

Start: 1058600

End: 1058881

Strand: Direct

Name: Ssh10b_2

Synonym: MK1089

Alternate gene names: 20094525

Gene position: 1058600-1058881 (Clockwise)

Preceding gene: 20094524

Following gene: 20094526

Centisome position: 62.46

GC content: 58.87

Gene sequence:

>282_bases
GTGGCTGAGGAGAACGTAATCTACGTCGGCAACAAGCCCGTGACCAACTACGTCCTGGCGGTGATGACGCAGTTCAGTGA
AGGCGCCGACGAAGTGAAACTCGTCGCCCGTGGCCGTGCGATCAGCCGTGCAGTCGACGTCGCGGAGTTCATCAGGAACA
ACGTCATGCCGGAGGTCGAAGTTAAGGACATCGAGATCGGCACCGAGGAGATCGAAACCGAGGAAGGCGACACCATCAGT
GTGTCTACGATCGCCATCACCCTGGCCAAGCCGTCCGAGTAA

Upstream 100 bases:

>100_bases
AGCTAGGGAGTCAACTTTATAGGACCGAACGCGGCGGCTCGGTTCGCCTGAAAAGACACCGTTCGCGGCGATAGGGAAGA
GATGCAAGTGGGGTGTTCCC

Downstream 100 bases:

>100_bases
AACGCCCCTCCCTCCCCTCCCCTGAGGGTGCCCGACTTGCCGGAGCTCCCATCAGTGGAGGATCTGATGTCGCGAAACCC
GGTTACAGTGGACGCCGACC

Product: DNA/RNA-binding protein albA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 93; Mature: 92

Protein sequence:

>93_residues
MAEENVIYVGNKPVTNYVLAVMTQFSEGADEVKLVARGRAISRAVDVAEFIRNNVMPEVEVKDIEIGTEEIETEEGDTIS
VSTIAITLAKPSE

Sequences:

>Translated_93_residues
MAEENVIYVGNKPVTNYVLAVMTQFSEGADEVKLVARGRAISRAVDVAEFIRNNVMPEVEVKDIEIGTEEIETEEGDTIS
VSTIAITLAKPSE
>Mature_92_residues
AEENVIYVGNKPVTNYVLAVMTQFSEGADEVKLVARGRAISRAVDVAEFIRNNVMPEVEVKDIEIGTEEIETEEGDTISV
STIAITLAKPSE

Specific function: Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May

COG id: COG1581

COG function: function code K; Archaeal DNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Probable). Chromosome (Probable)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the histone-like Alba family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ALBA2_METKA (Q8TWE6)

Other databases:

- EMBL:   AE009439
- RefSeq:   NP_614372.1
- ProteinModelPortal:   Q8TWE6
- SMR:   Q8TWE6
- GeneID:   1477190
- GenomeReviews:   AE009439_GR
- KEGG:   mka:MK1089
- NMPDR:   fig|190192.1.peg.1085
- HOGENOM:   HBG727709
- OMA:   KERTVST
- ProtClustDB:   PRK04015
- BioCyc:   MKAN190192:MK1089-MONOMER
- GO:   GO:0005694
- GO:   GO:0005737
- HAMAP:   MF_01122
- InterPro:   IPR013795
- InterPro:   IPR002775
- PIRSF:   PIRSF028732
- TIGRFAMs:   TIGR00285

Pfam domain/function: PF01918 Alba

EC number: NA

Molecular weight: Translated: 10143; Mature: 10011

Theoretical pI: Translated: 3.99; Mature: 3.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEENVIYVGNKPVTNYVLAVMTQFSEGADEVKLVARGRAISRAVDVAEFIRNNVMPEVE
CCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEHHHCCCHHHHHHHHHHHHHHCCCCCCE
VKDIEIGTEEIETEEGDTISVSTIAITLAKPSE
EEEEECCHHHCCCCCCCEEEEEEEEEEEECCCC
>Mature Secondary Structure 
AEENVIYVGNKPVTNYVLAVMTQFSEGADEVKLVARGRAISRAVDVAEFIRNNVMPEVE
CCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEHHHCCCHHHHHHHHHHHHHHCCCCCCE
VKDIEIGTEEIETEEGDTISVSTIAITLAKPSE
EEEEECCHHHCCCCCCCEEEEEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11930014