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The map label for this gene is McrD [H]

Identifier: 20094090

GI number: 20094090

Start: 612470

End: 612991

Strand: Direct

Name: McrD [H]

Synonym: MK0652

Alternate gene names: 20094090

Gene position: 612470-612991 (Clockwise)

Preceding gene: 20094089

Following gene: 20094091

Centisome position: 36.13

GC content: 61.69

Gene sequence:

>522_bases
ATGTTGGAGCGCAAGATCCCCGAAGGAGCCAAGCCCGAGGTGCAGATCTTCCCGCAGCGCCTCCTCAGCGCGGACACCAC
GGAGAAGCTCCTGAACGAGCTGCTGGAGAGGGTTGAAGGTATCGGTCGTATCGTGATCCACGGTCCGGGGCTCCCCAAGG
CAGTCCCCTTCGGACCCGCCCGCGGTAAGCCGGTCAAGCACCCGGAAAGACGCCCGATCGAAGTCCACGGTGAGAAGATC
CCCATGAAGGTCCAGACGGGCCAGATCATCGTCGAGATCGAGGACGAAGACCGACTCGACGATATCGTCGAGGAGATCGA
GAAGATCTGCCGTGAGATCCTGCCCTGCGACTTCGAGGTTCAGGTGGGAAGGTTCACCCGACACAAACCCACCGTCACCG
ACTACCTGAAGTTCGGCGAGGAGGGCGTTAAGAAGCTCGACAAGCGTCTCCTGGGACTCGTCGAGCCCCGAGCCCGGCTA
GCCGACAGGGTCTCCGTCCTCAAGAAGAAGGGGGAGGACTAA

Upstream 100 bases:

>100_bases
TCCCCCCGGAAGAACGCCCTCCCGCACCCGTGGTATCGTTTCGTAACCCATAACGAAAGGGGGCGCGACCTTGCCGGAGG
AGAAACTCGAGCGGCCCCGC

Downstream 100 bases:

>100_bases
CCTCGCGAGTGGGCCGCGAGACCTACGCCGTCGACTGCCGAGCCGCCATGGGGATGGGTAAAGGCGGTAGTCTGGCGCAA
CGGGGCACCATCGCCGAGAC

Product: methyl coenzyme M reductase, subunit D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MLERKIPEGAKPEVQIFPQRLLSADTTEKLLNELLERVEGIGRIVIHGPGLPKAVPFGPARGKPVKHPERRPIEVHGEKI
PMKVQTGQIIVEIEDEDRLDDIVEEIEKICREILPCDFEVQVGRFTRHKPTVTDYLKFGEEGVKKLDKRLLGLVEPRARL
ADRVSVLKKKGED

Sequences:

>Translated_173_residues
MLERKIPEGAKPEVQIFPQRLLSADTTEKLLNELLERVEGIGRIVIHGPGLPKAVPFGPARGKPVKHPERRPIEVHGEKI
PMKVQTGQIIVEIEDEDRLDDIVEEIEKICREILPCDFEVQVGRFTRHKPTVTDYLKFGEEGVKKLDKRLLGLVEPRARL
ADRVSVLKKKGED
>Mature_173_residues
MLERKIPEGAKPEVQIFPQRLLSADTTEKLLNELLERVEGIGRIVIHGPGLPKAVPFGPARGKPVKHPERRPIEVHGEKI
PMKVQTGQIIVEIEDEDRLDDIVEEIEKICREILPCDFEVQVGRFTRHKPTVTDYLKFGEEGVKKLDKRLLGLVEPRARL
ADRVSVLKKKGED

Specific function: Unknown

COG id: COG4055

COG function: function code H; Methyl coenzyme M reductase, subunit D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003901
- ProDom:   PD005228 [H]

Pfam domain/function: PF02505 MCR_D [H]

EC number: NA

Molecular weight: Translated: 19662; Mature: 19662

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLERKIPEGAKPEVQIFPQRLLSADTTEKLLNELLERVEGIGRIVIHGPGLPKAVPFGPA
CCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCC
RGKPVKHPERRPIEVHGEKIPMKVQTGQIIVEIEDEDRLDDIVEEIEKICREILPCDFEV
CCCCCCCCCCCCEEECCCCCCEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEE
QVGRFTRHKPTVTDYLKFGEEGVKKLDKRLLGLVEPRARLADRVSVLKKKGED
ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLERKIPEGAKPEVQIFPQRLLSADTTEKLLNELLERVEGIGRIVIHGPGLPKAVPFGPA
CCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCC
RGKPVKHPERRPIEVHGEKIPMKVQTGQIIVEIEDEDRLDDIVEEIEKICREILPCDFEV
CCCCCCCCCCCCEEECCCCCCEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEE
QVGRFTRHKPTVTDYLKFGEEGVKKLDKRLLGLVEPRARLADRVSVLKKKGED
ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]