| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
Click here to switch to the map view.
The map label for this gene is yfhR [C]
Identifier: 197120016
GI number: 197120016
Start: 4185566
End: 4186798
Strand: Direct
Name: yfhR [C]
Synonym: Gbem_3655
Alternate gene names: 197120016
Gene position: 4185566-4186798 (Clockwise)
Preceding gene: 197120012
Following gene: 197120017
Centisome position: 90.69
GC content: 64.8
Gene sequence:
>1233_bases ATGAACACCAAGAAAGTGAGTTTTCCCAATTCGCGCGGGGAGCAGTTGGCCGCACGGCTGGAGTTGCCCGATGACGAACA GCCGATTGCCTACGCCATCTTCGCCCACTGCTTTACCTGCACCAAAAACCTGAAGGCCGTGGTCAACATCACCCGCGCCA TGAGCAGCAAGCGCATCGCCGTGCTCCGCTTCGATTTCACCGGGCTGGGGGAGAGCGAGGGGGACTTCTCCCGGACCACC TTTTCCTCGGAGCTGAGCGACCTGGTCTCCGCGGCGCGTTTTTTGGAGCAGGAGTACGCCGCGCCGAAAATACTGGTCGG GCACTCGCTGGGGGGGGCGGCGGTGTTGGCTGCCGCGGGCGAAATCCCTTCGGCGCAGGGGATCGCCACCATAGCAGCCC CCTTCACCCCTGCGCACCTGAGGCAACTGCTGGGGGAATCCGCGCAGCAGATCGAACGCGAGGGGGAGGCCACGGTGCAC TTGGGGGGAAGCGACTTCACCATCAGGAAGAGCCTCCTCGACGATCTGGAGGCCCACCGCCCCGAGGAGTTCCTGGACCG TCTCGAAGCGGCGATCCTGGTGATGCACTCGCCGGCAGACAGGATAGTGGGGATCGATAACGCCTCCAGGATCTTCGAGG CGGCAAGGTTCCCCAAGAGCTTCATCTCGCTGGGCGAGGCCGACCACCTCCTCACCGATCCCGCCGACTCCCGCTATGCC GGCGAAGTCATCGCCACCTGGGCCTCGCGTTACCTTCCCCCCGCGGAAAATGCGCAGGCGGTGCAGCGGCGCGAGCCGGC TGACAACCGGCTCACCGCCCGCACCGCAGCACAGGGTTTCCGCACCGAAATATTCGCCAACGGCTTCAGCATGGTGGCGG ACGAACCGCTGCAGTACGGCGGGAGCAACGAGGGCCCCTCCCCTTACGAATACGTCATGGCAGGGCTCGGCGCCTGCACC ACGATGACGCTGCAGATGTACGCCCGCCAGAAGGGGTGGCCTTTGCGGGACGCGCTGGTTCGCCTGTCCCACCACAAGAT CCACGCCGAGGACTGCCGGGAATGCGAAACCAGGGAGGGACGCATCGACATGTTCAGCCGCGAGATCGAGCTCTTCGGGG AGCTCGACGAGTCGCAGAGGCAAAGGCTACTGGAGATCGCCGAGAAATGCCCGGTGCATCGCACCCTTTCCGGGGAGATC CGCATCGACACCAGGCTGCGGGAGAACGGTTGA
Upstream 100 bases:
>100_bases ACGCAGCCGTTTTCTTGACTTGGCCGCGCCGTAACATTACCTTTGAACAGGCTTGCCTATGCGAAGCCGCAAGGCGGAGG TAACGGAAAAGGAGGTCAGG
Downstream 100 bases:
>100_bases TATTTTTGGCTCAAGTTGCCGCGTGTCGCGCCGATAAATAATCTACGGGAGGATAGGCCATGGAGGTAAGTCAGATAGCA AGCATGCAGATCGCAGGCGC
Product: hydrolase
Products: NA
Alternate protein names: OsmC-Like Protein; Hydrolase; OsmC-Like Family Protein; Redox Protein; Osmc Family Protein; Hydrolase Of Alpha/Beta Superfamily Protein; OsmC-Like Protein Superfamily Protein; Redox Protein Regulator Of Disulfide Bond Formation; Alpha/Beta Fold Family Hydrolase; Osmotically Inducible Protein; Regulator Of Disulfide Bond Formation Redox Protein; Hydrolytic Protein; Alpha/Beta Hydrolase Fold Protein; OsmC-Like Protein/ Redox Protein; Hydroperoxide Resistance Protein OsmC-Like Protein; Peptidase S; Secreted Protein
Number of amino acids: Translated: 410; Mature: 410
Protein sequence:
>410_residues MNTKKVSFPNSRGEQLAARLELPDDEQPIAYAIFAHCFTCTKNLKAVVNITRAMSSKRIAVLRFDFTGLGESEGDFSRTT FSSELSDLVSAARFLEQEYAAPKILVGHSLGGAAVLAAAGEIPSAQGIATIAAPFTPAHLRQLLGESAQQIEREGEATVH LGGSDFTIRKSLLDDLEAHRPEEFLDRLEAAILVMHSPADRIVGIDNASRIFEAARFPKSFISLGEADHLLTDPADSRYA GEVIATWASRYLPPAENAQAVQRREPADNRLTARTAAQGFRTEIFANGFSMVADEPLQYGGSNEGPSPYEYVMAGLGACT TMTLQMYARQKGWPLRDALVRLSHHKIHAEDCRECETREGRIDMFSREIELFGELDESQRQRLLEIAEKCPVHRTLSGEI RIDTRLRENG
Sequences:
>Translated_410_residues MNTKKVSFPNSRGEQLAARLELPDDEQPIAYAIFAHCFTCTKNLKAVVNITRAMSSKRIAVLRFDFTGLGESEGDFSRTT FSSELSDLVSAARFLEQEYAAPKILVGHSLGGAAVLAAAGEIPSAQGIATIAAPFTPAHLRQLLGESAQQIEREGEATVH LGGSDFTIRKSLLDDLEAHRPEEFLDRLEAAILVMHSPADRIVGIDNASRIFEAARFPKSFISLGEADHLLTDPADSRYA GEVIATWASRYLPPAENAQAVQRREPADNRLTARTAAQGFRTEIFANGFSMVADEPLQYGGSNEGPSPYEYVMAGLGACT TMTLQMYARQKGWPLRDALVRLSHHKIHAEDCRECETREGRIDMFSREIELFGELDESQRQRLLEIAEKCPVHRTLSGEI RIDTRLRENG >Mature_410_residues MNTKKVSFPNSRGEQLAARLELPDDEQPIAYAIFAHCFTCTKNLKAVVNITRAMSSKRIAVLRFDFTGLGESEGDFSRTT FSSELSDLVSAARFLEQEYAAPKILVGHSLGGAAVLAAAGEIPSAQGIATIAAPFTPAHLRQLLGESAQQIEREGEATVH LGGSDFTIRKSLLDDLEAHRPEEFLDRLEAAILVMHSPADRIVGIDNASRIFEAARFPKSFISLGEADHLLTDPADSRYA GEVIATWASRYLPPAENAQAVQRREPADNRLTARTAAQGFRTEIFANGFSMVADEPLQYGGSNEGPSPYEYVMAGLGACT TMTLQMYARQKGWPLRDALVRLSHHKIHAEDCRECETREGRIDMFSREIELFGELDESQRQRLLEIAEKCPVHRTLSGEI RIDTRLRENG
Specific function: Unknown
COG id: COG1073
COG function: function code R; Hydrolases of the alpha/beta superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45265; Mature: 45265
Theoretical pI: Translated: 5.35; Mature: 5.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTKKVSFPNSRGEQLAARLELPDDEQPIAYAIFAHCFTCTKNLKAVVNITRAMSSKRIA CCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE VLRFDFTGLGESEGDFSRTTFSSELSDLVSAARFLEQEYAAPKILVGHSLGGAAVLAAAG EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCC EIPSAQGIATIAAPFTPAHLRQLLGESAQQIEREGEATVHLGGSDFTIRKSLLDDLEAHR CCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCC PEEFLDRLEAAILVMHSPADRIVGIDNASRIFEAARFPKSFISLGEADHLLTDPADSRYA CHHHHHHHHHHEEEEECCCCCEEECCCHHHHHHHHHCCHHHHHCCCCCHHCCCCCCCCHH GEVIATWASRYLPPAENAQAVQRREPADNRLTARTAAQGFRTEIFANGFSMVADEPLQYG HHHHHHHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCHHHCC GSNEGPSPYEYVMAGLGACTTMTLQMYARQKGWPLRDALVRLSHHKIHAEDCRECETREG CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHCCCC RIDMFSREIELFGELDESQRQRLLEIAEKCPVHRTLSGEIRIDTRLRENG CHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECEECCCC >Mature Secondary Structure MNTKKVSFPNSRGEQLAARLELPDDEQPIAYAIFAHCFTCTKNLKAVVNITRAMSSKRIA CCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE VLRFDFTGLGESEGDFSRTTFSSELSDLVSAARFLEQEYAAPKILVGHSLGGAAVLAAAG EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCC EIPSAQGIATIAAPFTPAHLRQLLGESAQQIEREGEATVHLGGSDFTIRKSLLDDLEAHR CCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCC PEEFLDRLEAAILVMHSPADRIVGIDNASRIFEAARFPKSFISLGEADHLLTDPADSRYA CHHHHHHHHHHEEEEECCCCCEEECCCHHHHHHHHHCCHHHHHCCCCCHHCCCCCCCCHH GEVIATWASRYLPPAENAQAVQRREPADNRLTARTAAQGFRTEIFANGFSMVADEPLQYG HHHHHHHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCHHHCC GSNEGPSPYEYVMAGLGACTTMTLQMYARQKGWPLRDALVRLSHHKIHAEDCRECETREG CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHCCCC RIDMFSREIELFGELDESQRQRLLEIAEKCPVHRTLSGEIRIDTRLRENG CHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA