| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197119951
Identifier: 197119951
GI number: 197119951
Start: 4105712
End: 4106710
Strand: Direct
Name: 197119951
Synonym: Gbem_3590
Alternate gene names: NA
Gene position: 4105712-4106710 (Clockwise)
Preceding gene: 197119950
Following gene: 197119959
Centisome position: 88.96
GC content: 53.75
Gene sequence:
>999_bases GTGACACTCTCTCCGGGAATAGTCGCCCTGCTTGTATCTTCTCTGCTGGTCAGCATGATGTTGCTTATCGCCGCCAAGGA AGGAGCGTCGATTATCCGGCACTGGAACATGACCAGCGGAAGCGAGCTTCAACTTGCCCTGGAGCGCCGGACCTATCTCA TCTCCACCATCGTCGCTATCTTCCTGCCGCTGCAACTTTTCTCCCTGTTTCTGTTTATCAACACCGTGGACGGCATCAGT CACCTTTTCACTGGCGCCATGTGCGCAGCGGGTACGCTGAAGGTGAACCGGTTCGGATATCCCACCTTGTTCCTGAAGAT GGTGACTTTCCTGTTGGCAGGGATATGGCTCATACTGAACCATGCAGACAATGAAGGGCGAGACTACCCTCTAATTCGGG TGAAGTACTGGTTGCTGTTGTTAATAGTCCCTGTCTTGCTCATTGAAACCATACTGCAAGCCTCTTTTTTCTGGCGGCTC CGCCCGGACGTCATCACCTCGTGCTGCGGCGCTCTCTTTAGCAAAGGTTCGGGAACCCTGGCATCCGACATCGTTGCCGC TCCAGTGGTTCCCGTGGCAGTAGCTTTCTTTGGGATAATAGCCGCAGCAATTGCATCTGGCGGGTTATTTCTCAAGACCA AGCGCGGTGCTGCTTCGTTCGGCTGCATAAGCGGGATAGCCTTCATCACCGCGATCATTGCGGTTATTTCTTTCATCTCC GTATATATCTACGAGCTCCCCTCGCACCATTGCCCGTTCTGTTTGCTCCATCGGGAGTATCACTTCATCGGATACCTGCT GTACGCGCTTCTTTTCTCTGGAGTTGTAGCCGGTGCCGGTGTGGGCGTGCTTCACCGATTCAAAAAGGTAGCGAGCATTA AAGGCCCGCTACTGCAGATGCAGCAAAAGCTGACGGTTGTCGCCCTGGCATCGTTCGCGACAACGGCACTGATCGTCATC TGGAAGATGGCCTCTTCGACGTTGAGGCTGTTTACTTAG
Upstream 100 bases:
>100_bases TTATCCTTGCCAGCCACGACCCCATCGTCTATGGCTGCGACCTTATCGGCCGGGTAGTGGAGTTGCGTGACGGGCGGGTA GTGACCGAGAGGAACCCGAG
Downstream 100 bases:
>100_bases CCCCGTTTTCTCCCTTCGCTACTACGCTGTTTACTGACAGTCTCAGGTTGTCAAAGACAATCCCTCTCTCAGCCCCGCCC GTCGTGGCGCTGATGTGCAG
Product: membrane protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 332; Mature: 331
Protein sequence:
>332_residues MTLSPGIVALLVSSLLVSMMLLIAAKEGASIIRHWNMTSGSELQLALERRTYLISTIVAIFLPLQLFSLFLFINTVDGIS HLFTGAMCAAGTLKVNRFGYPTLFLKMVTFLLAGIWLILNHADNEGRDYPLIRVKYWLLLLIVPVLLIETILQASFFWRL RPDVITSCCGALFSKGSGTLASDIVAAPVVPVAVAFFGIIAAAIASGGLFLKTKRGAASFGCISGIAFITAIIAVISFIS VYIYELPSHHCPFCLLHREYHFIGYLLYALLFSGVVAGAGVGVLHRFKKVASIKGPLLQMQQKLTVVALASFATTALIVI WKMASSTLRLFT
Sequences:
>Translated_332_residues MTLSPGIVALLVSSLLVSMMLLIAAKEGASIIRHWNMTSGSELQLALERRTYLISTIVAIFLPLQLFSLFLFINTVDGIS HLFTGAMCAAGTLKVNRFGYPTLFLKMVTFLLAGIWLILNHADNEGRDYPLIRVKYWLLLLIVPVLLIETILQASFFWRL RPDVITSCCGALFSKGSGTLASDIVAAPVVPVAVAFFGIIAAAIASGGLFLKTKRGAASFGCISGIAFITAIIAVISFIS VYIYELPSHHCPFCLLHREYHFIGYLLYALLFSGVVAGAGVGVLHRFKKVASIKGPLLQMQQKLTVVALASFATTALIVI WKMASSTLRLFT >Mature_331_residues TLSPGIVALLVSSLLVSMMLLIAAKEGASIIRHWNMTSGSELQLALERRTYLISTIVAIFLPLQLFSLFLFINTVDGISH LFTGAMCAAGTLKVNRFGYPTLFLKMVTFLLAGIWLILNHADNEGRDYPLIRVKYWLLLLIVPVLLIETILQASFFWRLR PDVITSCCGALFSKGSGTLASDIVAAPVVPVAVAFFGIIAAAIASGGLFLKTKRGAASFGCISGIAFITAIIAVISFISV YIYELPSHHCPFCLLHREYHFIGYLLYALLFSGVVAGAGVGVLHRFKKVASIKGPLLQMQQKLTVVALASFATTALIVIW KMASSTLRLFT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36064; Mature: 35933
Theoretical pI: Translated: 9.95; Mature: 9.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLSPGIVALLVSSLLVSMMLLIAAKEGASIIRHWNMTSGSELQLALERRTYLISTIVAI CCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH FLPLQLFSLFLFINTVDGISHLFTGAMCAAGTLKVNRFGYPTLFLKMVTFLLAGIWLILN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH HADNEGRDYPLIRVKYWLLLLIVPVLLIETILQASFFWRLRPDVITSCCGALFSKGSGTL CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCH ASDIVAAPVVPVAVAFFGIIAAAIASGGLFLKTKRGAASFGCISGIAFITAIIAVISFIS HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH VYIYELPSHHCPFCLLHREYHFIGYLLYALLFSGVVAGAGVGVLHRFKKVASIKGPLLQM HHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHH QQKLTVVALASFATTALIVIWKMASSTLRLFT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TLSPGIVALLVSSLLVSMMLLIAAKEGASIIRHWNMTSGSELQLALERRTYLISTIVAI CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH FLPLQLFSLFLFINTVDGISHLFTGAMCAAGTLKVNRFGYPTLFLKMVTFLLAGIWLILN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH HADNEGRDYPLIRVKYWLLLLIVPVLLIETILQASFFWRLRPDVITSCCGALFSKGSGTL CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCH ASDIVAAPVVPVAVAFFGIIAAAIASGGLFLKTKRGAASFGCISGIAFITAIIAVISFIS HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH VYIYELPSHHCPFCLLHREYHFIGYLLYALLFSGVVAGAGVGVLHRFKKVASIKGPLLQM HHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHH QQKLTVVALASFATTALIVIWKMASSTLRLFT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA