| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197119926
Identifier: 197119926
GI number: 197119926
Start: 4077483
End: 4078208
Strand: Direct
Name: 197119926
Synonym: Gbem_3565
Alternate gene names: NA
Gene position: 4077483-4078208 (Clockwise)
Preceding gene: 197119925
Following gene: 197119927
Centisome position: 88.35
GC content: 44.49
Gene sequence:
>726_bases ATGAAACTGCCTAGGGAGATTTCCCCTTGCCCAATTGTCCAATCTATTATAGAGCTCCGGCTTGCGCCTTCTCCGAATGT ACCTGCTGATGCTATTTTTGGCCTTGCCTACAGCCGTTTACGTCGAGAATTCCCTTCTGTTGCAAACTTGCCGATCGCTA ATATCCCAGAACAGCTACGGCAAAGCGATCCCAATCTGGCTTATCAGCCGTTGCACAAGTTCAGCAAAGACAACCTTTCT ATATCAATTGGCCCAAGGGTGATTGTATTTGCTTGCAGTCCCCCATACGTTGGCTGGGAAGCATTTCACAGAGAGATACG TAAAGCCATGGAAGCTTTACTAGACATCGAAGGGTATGTCATAAAAATTGAACGTCTGGGTCTGAGAGTAGTCAACATCT TTGACGGCCCAATTGCCGAAAGCATCATCTTCAATGTCACATCCAGTCCTTTACCGCTTGCAGAATCACAGTTCCATAGC ACATTTGTCTATCAAGAAGGAGAATTTAAAAACACCCTTCAGATCGGGAACAACGTAGACATCGTCAATGAAGGGAAAGC GGCAAAAGCCTCAATTCTTGACATTGACACGTTTAAAGAAGATGCTACTGGCGATATTCTTCAGAATTTATGGGATTTAA TAGACAGGGCACACAGTATAGAGAAGCGTACCTTCTTCTCGCTTTTACGCCCGGAAAAACTAGAACGCTTGAATCCAGTC TATTAA
Upstream 100 bases:
>100_bases GGAAGGCTAACGTCCCAAGAGTTTCTTCTTTACAAATACATCGACAGTAGCGTAAATTGCCTGCATTGTGCTCTTGTTAA ATAAAAAGGACTCAGGAATC
Downstream 100 bases:
>100_bases ACAAAGGAGGCTAGTATGGCTACGCAATCTGAGTCCCATCCAATGCTGCCGTCGCCCTTTTGTGTGGGGGCACTAGGTGC TGCTTTGTTGAGCGGTCTTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 241; Mature: 241
Protein sequence:
>241_residues MKLPREISPCPIVQSIIELRLAPSPNVPADAIFGLAYSRLRREFPSVANLPIANIPEQLRQSDPNLAYQPLHKFSKDNLS ISIGPRVIVFACSPPYVGWEAFHREIRKAMEALLDIEGYVIKIERLGLRVVNIFDGPIAESIIFNVTSSPLPLAESQFHS TFVYQEGEFKNTLQIGNNVDIVNEGKAAKASILDIDTFKEDATGDILQNLWDLIDRAHSIEKRTFFSLLRPEKLERLNPV Y
Sequences:
>Translated_241_residues MKLPREISPCPIVQSIIELRLAPSPNVPADAIFGLAYSRLRREFPSVANLPIANIPEQLRQSDPNLAYQPLHKFSKDNLS ISIGPRVIVFACSPPYVGWEAFHREIRKAMEALLDIEGYVIKIERLGLRVVNIFDGPIAESIIFNVTSSPLPLAESQFHS TFVYQEGEFKNTLQIGNNVDIVNEGKAAKASILDIDTFKEDATGDILQNLWDLIDRAHSIEKRTFFSLLRPEKLERLNPV Y >Mature_241_residues MKLPREISPCPIVQSIIELRLAPSPNVPADAIFGLAYSRLRREFPSVANLPIANIPEQLRQSDPNLAYQPLHKFSKDNLS ISIGPRVIVFACSPPYVGWEAFHREIRKAMEALLDIEGYVIKIERLGLRVVNIFDGPIAESIIFNVTSSPLPLAESQFHS TFVYQEGEFKNTLQIGNNVDIVNEGKAAKASILDIDTFKEDATGDILQNLWDLIDRAHSIEKRTFFSLLRPEKLERLNPV Y
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27182; Mature: 27182
Theoretical pI: Translated: 5.73; Mature: 5.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLPREISPCPIVQSIIELRLAPSPNVPADAIFGLAYSRLRREFPSVANLPIANIPEQLR CCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHCCCHHCCCHHHH QSDPNLAYQPLHKFSKDNLSISIGPRVIVFACSPPYVGWEAFHREIRKAMEALLDIEGYV CCCCCCHHHHHHHCCCCCEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEE IKIERLGLRVVNIFDGPIAESIIFNVTSSPLPLAESQFHSTFVYQEGEFKNTLQIGNNVD EEEEECCEEEEEECCCHHHHHHHEECCCCCCCCCHHHHHHEEEEECCCCCHHEECCCCCC IVNEGKAAKASILDIDTFKEDATGDILQNLWDLIDRAHSIEKRTFFSLLRPEKLERLNPV EEECCCCCCEEEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCC Y C >Mature Secondary Structure MKLPREISPCPIVQSIIELRLAPSPNVPADAIFGLAYSRLRREFPSVANLPIANIPEQLR CCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHCCCHHCCCHHHH QSDPNLAYQPLHKFSKDNLSISIGPRVIVFACSPPYVGWEAFHREIRKAMEALLDIEGYV CCCCCCHHHHHHHCCCCCEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEE IKIERLGLRVVNIFDGPIAESIIFNVTSSPLPLAESQFHSTFVYQEGEFKNTLQIGNNVD EEEEECCEEEEEECCCHHHHHHHEECCCCCCCCCHHHHHHEEEEECCCCCHHEECCCCCC IVNEGKAAKASILDIDTFKEDATGDILQNLWDLIDRAHSIEKRTFFSLLRPEKLERLNPV EEECCCCCCEEEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCC Y C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA