Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
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Accession | NC_011146 |
Length | 4,615,150 |
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The map label for this gene is 197119886
Identifier: 197119886
GI number: 197119886
Start: 4036068
End: 4037180
Strand: Direct
Name: 197119886
Synonym: Gbem_3524
Alternate gene names: NA
Gene position: 4036068-4037180 (Clockwise)
Preceding gene: 197119885
Following gene: 308535374
Centisome position: 87.45
GC content: 48.34
Gene sequence:
>1113_bases ATGAGAACGAATATAGACAAAGTCCTGCTATGTTTCTTTATTGCAATGGTGCTTAGTGTTATGGGTTGTGGAGGCAGCAG TTCGACAACCCCTGCAGCGACTACTGCTACCGGCAAGTTCATAGATGCTCCGGTTGAGGGACTAAAATACGTCTCTGGAG GACAAAATGGATTTACCGGACCTAACGGAGAATTTACTTACGAGGTTGGACAATCGGTTTCTTTTTCTGTTGGTGGCGTA GTTGTCGGCCGAGCGGCTGGTGCCAGCATTATTACTCCGATTGAGTTGGTAAAGACAGCGGCTCCAGGAACTACAGTTAC GGCCAGCACGCCTGCTGTTGTACAGATTGCTAGATTTCTTTTGACTGCTAGCAGCTTGACTTCAACAGGTATTAAAATAG ATCCTGCAGTAACAACAGCAAGTTCATCACAAAACATCAATCTATCAACCGCTTCCGATTTAACCTTCACAACATTTATC AACCAAATTGCAGCGGCGGCTGGGAGCCGTACAGTGACTACTACAACCGATGCTCAGGCCCACATCACCGCTAGCGTCAA TGGTCTTGCTTCCGGGACCATTGTTTTGCCTCCCGCATCATCTACTGGTGGCGGCAATACTCCACCGAACACAGCACCAG GCTCCGCTAAATCAACAGTGACAAAAACTTCTGCTTTACCTGTTGGTAACACTGATTGTCCATTTGGCGGGATCATAGTT ACATCAGGCATTGACACAAATGGCAATGGTGTTCTCGACGTATCAGAAGTGAGTTCATCTCAAGCGGTTTGTAACGGTGC TACTGGTGCTACTGGTGCTACTGGTGCTACTGGTGCTACTGGTGCTACTGGTGCTACCGGGCCACAGGGCGGTACGACTG GCATGTTTGTGGGGGCAACTGCCGTTGTCTGCCATAATTTGAGTCAGTGTGCTTGTTCTGGAGCGCAAGTAGTTAAGGCG CTTGGCGGTATGTGGTGTGACGGATCTGCGGCAATTAAAGAGTCGGCGATAGTGCAGAACAATCCAAGTGCATGGGAAGG AATTTGTATAGATCTGGTTACCACTACTTCGTTTGCTCCTTCAGGGATAGTTATTTCTTGCGTAGATCCCTAA
Upstream 100 bases:
>100_bases CGTCAACACCCTCAATAACATATGTAGAACAACGAGATAAAGACCCTATCTTGGTTGATGTTCATTCGATTCCTCAGGGT TGCAGTAAGGGAAGGAAAAC
Downstream 100 bases:
>100_bases ATCAAACGTGGTGAATGTTTTTTAAACACAGAAAGACATTCACACGAGACCTTTCAAACTAACAAAAACGTCGTTGGGCC ATTTATTACAAGGCTTAACG
Product: lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 370; Mature: 370
Protein sequence:
>370_residues MRTNIDKVLLCFFIAMVLSVMGCGGSSSTTPAATTATGKFIDAPVEGLKYVSGGQNGFTGPNGEFTYEVGQSVSFSVGGV VVGRAAGASIITPIELVKTAAPGTTVTASTPAVVQIARFLLTASSLTSTGIKIDPAVTTASSSQNINLSTASDLTFTTFI NQIAAAAGSRTVTTTTDAQAHITASVNGLASGTIVLPPASSTGGGNTPPNTAPGSAKSTVTKTSALPVGNTDCPFGGIIV TSGIDTNGNGVLDVSEVSSSQAVCNGATGATGATGATGATGATGATGPQGGTTGMFVGATAVVCHNLSQCACSGAQVVKA LGGMWCDGSAAIKESAIVQNNPSAWEGICIDLVTTTSFAPSGIVISCVDP
Sequences:
>Translated_370_residues MRTNIDKVLLCFFIAMVLSVMGCGGSSSTTPAATTATGKFIDAPVEGLKYVSGGQNGFTGPNGEFTYEVGQSVSFSVGGV VVGRAAGASIITPIELVKTAAPGTTVTASTPAVVQIARFLLTASSLTSTGIKIDPAVTTASSSQNINLSTASDLTFTTFI NQIAAAAGSRTVTTTTDAQAHITASVNGLASGTIVLPPASSTGGGNTPPNTAPGSAKSTVTKTSALPVGNTDCPFGGIIV TSGIDTNGNGVLDVSEVSSSQAVCNGATGATGATGATGATGATGATGPQGGTTGMFVGATAVVCHNLSQCACSGAQVVKA LGGMWCDGSAAIKESAIVQNNPSAWEGICIDLVTTTSFAPSGIVISCVDP >Mature_370_residues MRTNIDKVLLCFFIAMVLSVMGCGGSSSTTPAATTATGKFIDAPVEGLKYVSGGQNGFTGPNGEFTYEVGQSVSFSVGGV VVGRAAGASIITPIELVKTAAPGTTVTASTPAVVQIARFLLTASSLTSTGIKIDPAVTTASSSQNINLSTASDLTFTTFI NQIAAAAGSRTVTTTTDAQAHITASVNGLASGTIVLPPASSTGGGNTPPNTAPGSAKSTVTKTSALPVGNTDCPFGGIIV TSGIDTNGNGVLDVSEVSSSQAVCNGATGATGATGATGATGATGATGPQGGTTGMFVGATAVVCHNLSQCACSGAQVVKA LGGMWCDGSAAIKESAIVQNNPSAWEGICIDLVTTTSFAPSGIVISCVDP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36105; Mature: 36105
Theoretical pI: Translated: 4.69; Mature: 4.69
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00018 EF_HAND_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTNIDKVLLCFFIAMVLSVMGCGGSSSTTPAATTATGKFIDAPVEGLKYVSGGQNGFTG CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCEECCCHHHHEECCCCCCCCCC PNGEFTYEVGQSVSFSVGGVVVGRAAGASIITPIELVKTAAPGTTVTASTPAVVQIARFL CCCCEEEECCCCEEEEECCEEEECCCCCCCCCHHHHHHHCCCCCEEECCCHHHHHHHHHH LTASSLTSTGIKIDPAVTTASSSQNINLSTASDLTFTTFINQIAAAAGSRTVTTTTDAQA HHHHHHHCCCEEECCCEEECCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCE HITASVNGLASGTIVLPPASSTGGGNTPPNTAPGSAKSTVTKTSALPVGNTDCPFGGIIV EEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEE TSGIDTNGNGVLDVSEVSSSQAVCNGATGATGATGATGATGATGATGPQGGTTGMFVGAT ECCCCCCCCCEEEHHHCCCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHH AVVCHNLSQCACSGAQVVKALGGMWCDGSAAIKESAIVQNNPSAWEGICIDLVTTTSFAP HHHHHCHHHHHCCHHHHHHHHCCCCCCCCHHHHHCEEECCCCCCCCCEEEEEEEECCCCC SGIVISCVDP CCEEEEECCC >Mature Secondary Structure MRTNIDKVLLCFFIAMVLSVMGCGGSSSTTPAATTATGKFIDAPVEGLKYVSGGQNGFTG CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCEECCCHHHHEECCCCCCCCCC PNGEFTYEVGQSVSFSVGGVVVGRAAGASIITPIELVKTAAPGTTVTASTPAVVQIARFL CCCCEEEECCCCEEEEECCEEEECCCCCCCCCHHHHHHHCCCCCEEECCCHHHHHHHHHH LTASSLTSTGIKIDPAVTTASSSQNINLSTASDLTFTTFINQIAAAAGSRTVTTTTDAQA HHHHHHHCCCEEECCCEEECCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCE HITASVNGLASGTIVLPPASSTGGGNTPPNTAPGSAKSTVTKTSALPVGNTDCPFGGIIV EEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEE TSGIDTNGNGVLDVSEVSSSQAVCNGATGATGATGATGATGATGATGPQGGTTGMFVGAT ECCCCCCCCCEEEHHHCCCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHH AVVCHNLSQCACSGAQVVKALGGMWCDGSAAIKESAIVQNNPSAWEGICIDLVTTTSFAP HHHHHCHHHHHCCHHHHHHHHCCCCCCCCHHHHHCEEECCCCCCCCCEEEEEEEECCCCC SGIVISCVDP CCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA