| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
Click here to switch to the map view.
The map label for this gene is 197119719
Identifier: 197119719
GI number: 197119719
Start: 3855693
End: 3856223
Strand: Direct
Name: 197119719
Synonym: Gbem_3355
Alternate gene names: NA
Gene position: 3855693-3856223 (Clockwise)
Preceding gene: 197119718
Following gene: 197119720
Centisome position: 83.54
GC content: 57.63
Gene sequence:
>531_bases ATGAAACTATTACTGCACATATGCTGCGGGCCGTGCGCCATCTACCCCGTGAAGGAGCTTAGGTCCAGCGGGGTGGATGT CACCGGCTTTTTTTACAACCACAACATACATCCCTACACCGAGTACAAGCTCCGGATGGCGGCGCTGAAAAAGTACGCCG AGATGGTCCAGTTGGAGGTGCACTACCGCGAGGAGTACCGGCTGGAAGAGTTCCTGTCGCAGGTGGCGGGCGAGCCGCAG GCCCGCTGCGCCTACTGTTACCGGTCGAGACTTGAGGAGACCGCCAAGACAGCGGCCCTCATGGGTTTCCCCAGCTTCTC GTCCACCTTGCTGTACAGCCGGTACCAAAACCAGGAACTGATCCGCGAGTTCGGTGATAAACTCGCGGAGCGCTACGGCG TGAAATTCCACTACCAGGATTTCAGGAGCGGCTGGCAGGAAGGGATCGACCTTTCCAAGGAGATGGGGCTGTACCGCCAG AAGTACTGCGGCTGCATCTACAGCGAGAAGGAAAGGTACGTCAGGAAATAA
Upstream 100 bases:
>100_bases GGTAGACGGCCCGGCCTACGCCGCCGCCTTCGCCAAGGTAAAGGCAGACGCAATTAAGTACCTCTTGGGCGCACCGGGCG GAGCGCGCCCCTAGGAAGCC
Downstream 100 bases:
>100_bases GTTATAGTCCCCGAGTCGCTAGTGGCCCTCCCCCCCTCCCCTATCTCATGGGGCGAGGGGCGATCCTCCTTCAACAGTTG GGGACGACATGCCTTCACTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 176; Mature: 176
Protein sequence:
>176_residues MKLLLHICCGPCAIYPVKELRSSGVDVTGFFYNHNIHPYTEYKLRMAALKKYAEMVQLEVHYREEYRLEEFLSQVAGEPQ ARCAYCYRSRLEETAKTAALMGFPSFSSTLLYSRYQNQELIREFGDKLAERYGVKFHYQDFRSGWQEGIDLSKEMGLYRQ KYCGCIYSEKERYVRK
Sequences:
>Translated_176_residues MKLLLHICCGPCAIYPVKELRSSGVDVTGFFYNHNIHPYTEYKLRMAALKKYAEMVQLEVHYREEYRLEEFLSQVAGEPQ ARCAYCYRSRLEETAKTAALMGFPSFSSTLLYSRYQNQELIREFGDKLAERYGVKFHYQDFRSGWQEGIDLSKEMGLYRQ KYCGCIYSEKERYVRK >Mature_176_residues MKLLLHICCGPCAIYPVKELRSSGVDVTGFFYNHNIHPYTEYKLRMAALKKYAEMVQLEVHYREEYRLEEFLSQVAGEPQ ARCAYCYRSRLEETAKTAALMGFPSFSSTLLYSRYQNQELIREFGDKLAERYGVKFHYQDFRSGWQEGIDLSKEMGLYRQ KYCGCIYSEKERYVRK
Specific function: Unknown
COG id: COG1636
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003828 [H]
Pfam domain/function: PF02677 DUF208 [H]
EC number: NA
Molecular weight: Translated: 20850; Mature: 20850
Theoretical pI: Translated: 8.44; Mature: 8.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 6.8 %Cys+Met (Translated Protein) 4.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 6.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLLLHICCGPCAIYPVKELRSSGVDVTGFFYNHNIHPYTEYKLRMAALKKYAEMVQLEV CCCEEEECCCCHHHCCHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH HYREEYRLEEFLSQVAGEPQARCAYCYRSRLEETAKTAALMGFPSFSSTLLYSRYQNQEL HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHH IREFGDKLAERYGVKFHYQDFRSGWQEGIDLSKEMGLYRQKYCGCIYSEKERYVRK HHHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHCC >Mature Secondary Structure MKLLLHICCGPCAIYPVKELRSSGVDVTGFFYNHNIHPYTEYKLRMAALKKYAEMVQLEV CCCEEEECCCCHHHCCHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH HYREEYRLEEFLSQVAGEPQARCAYCYRSRLEETAKTAALMGFPSFSSTLLYSRYQNQEL HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHH IREFGDKLAERYGVKFHYQDFRSGWQEGIDLSKEMGLYRQKYCGCIYSEKERYVRK HHHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800; 10675023 [H]