| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197119544
Identifier: 197119544
GI number: 197119544
Start: 3656783
End: 3657709
Strand: Direct
Name: 197119544
Synonym: Gbem_3174
Alternate gene names: NA
Gene position: 3656783-3657709 (Clockwise)
Preceding gene: 197119543
Following gene: 197119547
Centisome position: 79.23
GC content: 55.99
Gene sequence:
>927_bases ATGAAAATCATCTGTCCTAACTGCCACCACCGGCACCGGGGGCACATACCTCAAAGCACGATTACGCCTTTTTCACTGGT CTGCGCCCGATGCTCCACGGAGTTCCTGGTGAACTGGAAAATCAGGCTGGCAGGAAAGACGGACGACACCATCGTCGTCT GTTCCTGGTGCGCCGCAAAGCAACCGGACTCCGATCGATGCCAATACTGCGGGCGCCCCTTCTATGACTATGCCCACTGC AGGCAAACGCCAAGAAGAGCACCGAAGGCCAACCCAAAACGACGCGACGAAAAACCGGTTCAGGCTCAGCGGGCCGCACA AGGGGTTCCCGATACGCGGCGGGTGGCGGGTAGATTCCCTTCTGCCGCCAGACGGAAAATCTGCATGCTGGCATTAACGG CAATAGCTGTTCTTGGTATCTCGCTGAACTCCTTCTGGCACAAAAACAGCGAACAGCAGTACCTGACCAATTACGTGATC GCGCTTTACGGCATCCGGTCCGGGCTTGAGTTGAGCGGCAGGACATGCAGCGACATCGCCGCCGACTGGCAGAAGGACCT CGATGCAGGGAGGGAGGTGTCGAACGATATAAGCAGGAAGGAATCGGAAGACCTGGCGACAGTGAAGCGCGAGATCGACC TGGTAATGAGCAAGCTGAAACCGGCTCCGGAGAAGTTGGGCAGAAGTAGTGCAAAGCTGCAAGAGATGTATGACATCTAT CTTGAGGTACACACCTTGGCGAACAGGCCCTTCGGCTCACCAAAGAGCATCATTTCGACGGTCGACAGCTTAAAGACCGC TTTTCGGCTGAAGGTTCGCGAGCTGAAACAGATCATGCCCCCGCAACTCTCAGACGAAATCACCAAGTCGGCCGTCAAAT ACGATCTGACTTTCCTGGACCAGGAAAACGCAACGGGGGAGAGGTAG
Upstream 100 bases:
>100_bases GGTCCTCAGAATGAGTAACCGCGGCACCCTGGAGTCTTCGCCCCTTCTCTACCAGGAGACGGCATGACGGTTGCGGCTTT AAAGGCGAGGTTGAAAGGCC
Downstream 100 bases:
>100_bases TCCTCCGTGTCCAGCGTAGACCTCAGGGTCCTCTGTGTTCCGCTTCGGTTCGTTCCCTAATCGAACTCCAGCTTATAGTA GAGGTCGGCGCCGCTTTCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 308; Mature: 308
Protein sequence:
>308_residues MKIICPNCHHRHRGHIPQSTITPFSLVCARCSTEFLVNWKIRLAGKTDDTIVVCSWCAAKQPDSDRCQYCGRPFYDYAHC RQTPRRAPKANPKRRDEKPVQAQRAAQGVPDTRRVAGRFPSAARRKICMLALTAIAVLGISLNSFWHKNSEQQYLTNYVI ALYGIRSGLELSGRTCSDIAADWQKDLDAGREVSNDISRKESEDLATVKREIDLVMSKLKPAPEKLGRSSAKLQEMYDIY LEVHTLANRPFGSPKSIISTVDSLKTAFRLKVRELKQIMPPQLSDEITKSAVKYDLTFLDQENATGER
Sequences:
>Translated_308_residues MKIICPNCHHRHRGHIPQSTITPFSLVCARCSTEFLVNWKIRLAGKTDDTIVVCSWCAAKQPDSDRCQYCGRPFYDYAHC RQTPRRAPKANPKRRDEKPVQAQRAAQGVPDTRRVAGRFPSAARRKICMLALTAIAVLGISLNSFWHKNSEQQYLTNYVI ALYGIRSGLELSGRTCSDIAADWQKDLDAGREVSNDISRKESEDLATVKREIDLVMSKLKPAPEKLGRSSAKLQEMYDIY LEVHTLANRPFGSPKSIISTVDSLKTAFRLKVRELKQIMPPQLSDEITKSAVKYDLTFLDQENATGER >Mature_308_residues MKIICPNCHHRHRGHIPQSTITPFSLVCARCSTEFLVNWKIRLAGKTDDTIVVCSWCAAKQPDSDRCQYCGRPFYDYAHC RQTPRRAPKANPKRRDEKPVQAQRAAQGVPDTRRVAGRFPSAARRKICMLALTAIAVLGISLNSFWHKNSEQQYLTNYVI ALYGIRSGLELSGRTCSDIAADWQKDLDAGREVSNDISRKESEDLATVKREIDLVMSKLKPAPEKLGRSSAKLQEMYDIY LEVHTLANRPFGSPKSIISTVDSLKTAFRLKVRELKQIMPPQLSDEITKSAVKYDLTFLDQENATGER
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34826; Mature: 34826
Theoretical pI: Translated: 9.65; Mature: 9.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 3.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIICPNCHHRHRGHIPQSTITPFSLVCARCSTEFLVNWKIRLAGKTDDTIVVCSWCAAK CEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCEEEEEECCCCC QPDSDRCQYCGRPFYDYAHCRQTPRRAPKANPKRRDEKPVQAQRAAQGVPDTRRVAGRFP CCCCHHHHHCCCCCHHHHHHHHCHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCC SAARRKICMLALTAIAVLGISLNSFWHKNSEQQYLTNYVIALYGIRSGLELSGRTCSDIA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH ADWQKDLDAGREVSNDISRKESEDLATVKREIDLVMSKLKPAPEKLGRSSAKLQEMYDIY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHH LEVHTLANRPFGSPKSIISTVDSLKTAFRLKVRELKQIMPPQLSDEITKSAVKYDLTFLD HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEE QENATGER CCCCCCCC >Mature Secondary Structure MKIICPNCHHRHRGHIPQSTITPFSLVCARCSTEFLVNWKIRLAGKTDDTIVVCSWCAAK CEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCEEEEEECCCCC QPDSDRCQYCGRPFYDYAHCRQTPRRAPKANPKRRDEKPVQAQRAAQGVPDTRRVAGRFP CCCCHHHHHCCCCCHHHHHHHHCHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCC SAARRKICMLALTAIAVLGISLNSFWHKNSEQQYLTNYVIALYGIRSGLELSGRTCSDIA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH ADWQKDLDAGREVSNDISRKESEDLATVKREIDLVMSKLKPAPEKLGRSSAKLQEMYDIY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHH LEVHTLANRPFGSPKSIISTVDSLKTAFRLKVRELKQIMPPQLSDEITKSAVKYDLTFLD HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEE QENATGER CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA