| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
Click here to switch to the map view.
The map label for this gene is endo I [H]
Identifier: 197118183
GI number: 197118183
Start: 2076906
End: 2079389
Strand: Direct
Name: endo I [H]
Synonym: Gbem_1798
Alternate gene names: 197118183
Gene position: 2076906-2079389 (Clockwise)
Preceding gene: 197118182
Following gene: 197118184
Centisome position: 45.0
GC content: 62.64
Gene sequence:
>2484_bases ATGAAGAAGTTGAAGGCAATAACGGCAACAGCGTTAGGAGTCCTGATGTACACGAGTGTCGCCTCCGCGGCAGTACTGTT CTCAGAGGATTTCAACGCGCAACCAGACTGGAGCCCTTCACAGGGGACCTCCGGTGCTACCTGCATTCCCGGGCAAAACT GCGCCACTCCCATCCCGACCGGTTTTTACGACTACCGCCTGGCCGGCACGGAAGCTTGCAGCAACCTCGACGGCAAGCAC AACACCCTGAACATAAACGGCCTGCACCCGAGAGGGACGGGGAAGAGCTTCATGATGTGGAACGAGCCCTGCTATAGCAG AAGCGGCAGCTGGGGCTCCGATGGCCTCCTCGGGATCGATTTCGCCCCTCAAAACGAGGTGTACGTTAGGTACTGGATCC AGTTCCAGCCCGACTGGAGGTGGGATGGCGACGGTTCGGTCGGCGGGCGCGCCGTGGGTACGGCGACCACGAGCCCGATG GAAAAGTTCATGCACATCTCCCACCTGAACACCGGGAACACGAACTTCTGGGACTTCTTCAGCGGCACCCAGAACAAACC CCGCTTCACCCCGCAGCTCGCCAAGTTCGGCGGCGGCAGCTATCGGCTCCAGTTCAACCTCCCTCATTCCCCTCTGACTG CGGCACGTGATAGTTCTGCCTCGTTCACTACTAATGTATTCCTTGGCGCTGCCCCCCTCGACATGAACGTACCGGGCCCC GGTGGTTTGCCGGCAGCTCCCCGGGACGGCAAGTGGCACTGCTTCGAGTTCTACGTCAAGCTGAACAGCGCAGGGGGGGT GGCCGACGGCGTCTCGAAGGTCTGGTACGATGGCGCCCTGGTCGGCTCGACCACTAACGCCGTATGGATTCCTTTAGGCG ATGATCCGGCCCAGTGGAAGTGGAACCACGCCTGGCTCGGCGGCAACAACGCCAACCTCTACCTGCCCGCCAACGAGCAG TGGTACGCCATAGACGACGTTGTGGTGAGCACCACCTACAGCGGCCCGCCGGCGCAGCCGGGGAGCGTCACCGCCACCGC CAGCGCGGCGAACACCGTGAGCCTGCGCTGGAGCCCCGGCAGCAACGGGGTCCCGTTCTCCCTGAACGGCTACCGGATTT ACTACGGCAAGGACGCAACCAACCTGAACATGAAAGTGGACGTGGGGAACGTGCAGCAGTACAGCATCTCCTCCCTCGAC CCCTCGACCAAGTACTACTTCGCGGTCTCCGCCTACAACAAGGGGAGCTACGACAGTAATGACAACGAAGGGATGCCCTC GGTAACGGCAAGCGCGACCACCGTTTCTAGCAGTACCACTACCACGACCACTGCAGATGCCGTCGCGCCGGTAGCTTCCA TCTCCTCGCCGGCTACCGGCTCCACCGTGAGCGGCAACGTCACTATCAACGTGGCAGCCAGCGACAACGTGGCGGTCAGC AAGGTAGAGCTGTACCTGAACGGCTCCATCTTCGGCGTGGTGGGGTCGGCCCCCTACACCCTGAGCTGGAATACGGCCAA TAACCCCAACGCCACCTACACCCTGACCGCGAAGGCCTACGACGCAGCCGGCAACGTGGGGCAGGCTTCGAGCTCGGTGA CCGTGAAAAACGCAGTCGCAGTAACCGACGCTTCGGCCCCTGTGATCAGCTCCTTCACCATGCCCGCGTCCGCCACATCG CTTACCGTTCCGGTTACCGCGTTCGCCGCCACCGACGACGTCGGCGTCACCGGCTACCAGATCACCGAGAGCGCGACCGC TCCCGCGGCGGGCGCCACCACCTGGAAAGCAACCGCGCCGACCTCCTGCACCTTCTCGGCAGCAGGTATCCGCACCGCTT ACGCCTGGTGCAAGGACGCCTCCGGCAAGGTATCGGCAGCAAAAACCGCCCAGGTCAACATCACCACCGCTACCACCACG ACCGGGGACACGACCGCCCCGGTGGTCAGCATCGCCTCGCCGGTGACCGGTTCCACGGTCAAGGGGGCAGTGACTGTATC CGCCAACGCCACCGACAACGTCGGTGTGAAGAAGGCCGAGTTCTACGTGAACGGGGTGCTCAAGCTGACCTCCACTACCG CGCCCTACAGCGTCACCTGGGGGACCACCAACTACCCTAACGGCTCCAACAGCGTCACCGTAAAGGCGTACGACGCAGCC GGCAACGTCGGCCAGGCAACTTCGACCGTCACCATCATGAACGGCGACACTACTGCCCCGAAGGTTTCCATAACCTCCCC GACCTCCGGGTCCACCGCCAAGGGGGTAGTGACAGTATCCGCTAACGTCACCGACAACGTCGGCGTAAAAAAGGTCGAGT TCTACGTGAACGGCGTGCTCAAGCTGACCTCCACCGCGGCTCCCTACACCGTCACCTGGGGCACCACGAATTACCCGAAC GGCTCCAACAGCGTGACCATCAAGGGGTATGACGCGGCCGGCAACGTCGGCCAGGCCACAACGACTGTAACCGTGGCGAA TTGA
Upstream 100 bases:
>100_bases TCTCCCTGAGACAGCCGGGTCGCCGATTCTACGCGATGGAACCCCCATCGTAGACCGGCGACCCGGCTTTTTTTTGTATC GGGGATCAAAGGAGAGTTAA
Downstream 100 bases:
>100_bases GAAGACAGCCCCGGCCATAAAGGGCTCCGTGGCAAGCAAGTCCGTGACCAGGCTGTATTGAGCTAGCTGATACCGCCTTG TATGTGGAAGCAGCAGCAAA
Product: fibronectin type III domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 827; Mature: 827
Protein sequence:
>827_residues MKKLKAITATALGVLMYTSVASAAVLFSEDFNAQPDWSPSQGTSGATCIPGQNCATPIPTGFYDYRLAGTEACSNLDGKH NTLNINGLHPRGTGKSFMMWNEPCYSRSGSWGSDGLLGIDFAPQNEVYVRYWIQFQPDWRWDGDGSVGGRAVGTATTSPM EKFMHISHLNTGNTNFWDFFSGTQNKPRFTPQLAKFGGGSYRLQFNLPHSPLTAARDSSASFTTNVFLGAAPLDMNVPGP GGLPAAPRDGKWHCFEFYVKLNSAGGVADGVSKVWYDGALVGSTTNAVWIPLGDDPAQWKWNHAWLGGNNANLYLPANEQ WYAIDDVVVSTTYSGPPAQPGSVTATASAANTVSLRWSPGSNGVPFSLNGYRIYYGKDATNLNMKVDVGNVQQYSISSLD PSTKYYFAVSAYNKGSYDSNDNEGMPSVTASATTVSSSTTTTTTADAVAPVASISSPATGSTVSGNVTINVAASDNVAVS KVELYLNGSIFGVVGSAPYTLSWNTANNPNATYTLTAKAYDAAGNVGQASSSVTVKNAVAVTDASAPVISSFTMPASATS LTVPVTAFAATDDVGVTGYQITESATAPAAGATTWKATAPTSCTFSAAGIRTAYAWCKDASGKVSAAKTAQVNITTATTT TGDTTAPVVSIASPVTGSTVKGAVTVSANATDNVGVKKAEFYVNGVLKLTSTTAPYSVTWGTTNYPNGSNSVTVKAYDAA GNVGQATSTVTIMNGDTTAPKVSITSPTSGSTAKGVVTVSANVTDNVGVKKVEFYVNGVLKLTSTAAPYTVTWGTTNYPN GSNSVTIKGYDAAGNVGQATTTVTVAN
Sequences:
>Translated_827_residues MKKLKAITATALGVLMYTSVASAAVLFSEDFNAQPDWSPSQGTSGATCIPGQNCATPIPTGFYDYRLAGTEACSNLDGKH NTLNINGLHPRGTGKSFMMWNEPCYSRSGSWGSDGLLGIDFAPQNEVYVRYWIQFQPDWRWDGDGSVGGRAVGTATTSPM EKFMHISHLNTGNTNFWDFFSGTQNKPRFTPQLAKFGGGSYRLQFNLPHSPLTAARDSSASFTTNVFLGAAPLDMNVPGP GGLPAAPRDGKWHCFEFYVKLNSAGGVADGVSKVWYDGALVGSTTNAVWIPLGDDPAQWKWNHAWLGGNNANLYLPANEQ WYAIDDVVVSTTYSGPPAQPGSVTATASAANTVSLRWSPGSNGVPFSLNGYRIYYGKDATNLNMKVDVGNVQQYSISSLD PSTKYYFAVSAYNKGSYDSNDNEGMPSVTASATTVSSSTTTTTTADAVAPVASISSPATGSTVSGNVTINVAASDNVAVS KVELYLNGSIFGVVGSAPYTLSWNTANNPNATYTLTAKAYDAAGNVGQASSSVTVKNAVAVTDASAPVISSFTMPASATS LTVPVTAFAATDDVGVTGYQITESATAPAAGATTWKATAPTSCTFSAAGIRTAYAWCKDASGKVSAAKTAQVNITTATTT TGDTTAPVVSIASPVTGSTVKGAVTVSANATDNVGVKKAEFYVNGVLKLTSTTAPYSVTWGTTNYPNGSNSVTVKAYDAA GNVGQATSTVTIMNGDTTAPKVSITSPTSGSTAKGVVTVSANVTDNVGVKKVEFYVNGVLKLTSTAAPYTVTWGTTNYPN GSNSVTIKGYDAAGNVGQATTTVTVAN >Mature_827_residues MKKLKAITATALGVLMYTSVASAAVLFSEDFNAQPDWSPSQGTSGATCIPGQNCATPIPTGFYDYRLAGTEACSNLDGKH NTLNINGLHPRGTGKSFMMWNEPCYSRSGSWGSDGLLGIDFAPQNEVYVRYWIQFQPDWRWDGDGSVGGRAVGTATTSPM EKFMHISHLNTGNTNFWDFFSGTQNKPRFTPQLAKFGGGSYRLQFNLPHSPLTAARDSSASFTTNVFLGAAPLDMNVPGP GGLPAAPRDGKWHCFEFYVKLNSAGGVADGVSKVWYDGALVGSTTNAVWIPLGDDPAQWKWNHAWLGGNNANLYLPANEQ WYAIDDVVVSTTYSGPPAQPGSVTATASAANTVSLRWSPGSNGVPFSLNGYRIYYGKDATNLNMKVDVGNVQQYSISSLD PSTKYYFAVSAYNKGSYDSNDNEGMPSVTASATTVSSSTTTTTTADAVAPVASISSPATGSTVSGNVTINVAASDNVAVS KVELYLNGSIFGVVGSAPYTLSWNTANNPNATYTLTAKAYDAAGNVGQASSSVTVKNAVAVTDASAPVISSFTMPASATS LTVPVTAFAATDDVGVTGYQITESATAPAAGATTWKATAPTSCTFSAAGIRTAYAWCKDASGKVSAAKTAQVNITTATTT TGDTTAPVVSIASPVTGSTVKGAVTVSANATDNVGVKKAEFYVNGVLKLTSTTAPYSVTWGTTNYPNGSNSVTVKAYDAA GNVGQATSTVTIMNGDTTAPKVSITSPTSGSTAKGVVTVSANVTDNVGVKKVEFYVNGVLKLTSTAAPYTVTWGTTNYPN GSNSVTIKGYDAAGNVGQATTTVTVAN
Specific function: Hydrolyzes chitin oligosaccharides; (GlcNAc)4 to (GlcNAc)2 and (GlcNAc)5,6 to (GlcNAc)2 and (GlcNAc)3. Inactive towards chitin, glucosamine oligosaccharides, glycoproteins and glycopeptides containing (GlcNAc)2 [H]
COG id: COG3979
COG function: function code R; Uncharacterized protein contain chitin-binding domain type 3
Gene ontology:
Cell location: Periplasm (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 18 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003610 - InterPro: IPR009470 - InterPro: IPR011583 - InterPro: IPR001223 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF02839 CBM_5_12; PF06483 ChiC; PF00704 Glyco_hydro_18 [H]
EC number: =3.2.1.14 [H]
Molecular weight: Translated: 85690; Mature: 85690
Theoretical pI: Translated: 6.86; Mature: 6.86
Prosite motif: PS50853 FN3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLKAITATALGVLMYTSVASAAVLFSEDFNAQPDWSPSQGTSGATCIPGQNCATPIPT CCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCC GFYDYRLAGTEACSNLDGKHNTLNINGLHPRGTGKSFMMWNEPCYSRSGSWGSDGLLGID CCEEEEEECHHHHHCCCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEE FAPQNEVYVRYWIQFQPDWRWDGDGSVGGRAVGTATTSPMEKFMHISHLNTGNTNFWDFF ECCCCCEEEEEEEEECCCCCCCCCCCCCCEEEECCCCCHHHHHHEEEECCCCCCCEEEEC SGTQNKPRFTPQLAKFGGGSYRLQFNLPHSPLTAARDSSASFTTNVFLGAAPLDMNVPGP CCCCCCCCCCHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCC GGLPAAPRDGKWHCFEFYVKLNSAGGVADGVSKVWYDGALVGSTTNAVWIPLGDDPAQWK CCCCCCCCCCCEEEEEEEEEECCCCCCHHCCHHHEECCEEECCCCCEEEEECCCCCCCEE WNHAWLGGNNANLYLPANEQWYAIDDVVVSTTYSGPPAQPGSVTATASAANTVSLRWSPG EEEEEECCCCCEEEECCCCCEEEEEEEEEEEECCCCCCCCCCEEEEECCCEEEEEEECCC SNGVPFSLNGYRIYYGKDATNLNMKVDVGNVQQYSISSLDPSTKYYFAVSAYNKGSYDSN CCCCCEEECCEEEEECCCCCCEEEEEEECCCEEEEECCCCCCCEEEEEEEECCCCCCCCC DNEGMPSVTASATTVSSSTTTTTTADAVAPVASISSPATGSTVSGNVTINVAASDNVAVS CCCCCCCEEEEEEEECCCCCEEECHHHHHHHHHCCCCCCCCEEECCEEEEEECCCCEEEE KVELYLNGSIFGVVGSAPYTLSWNTANNPNATYTLTAKAYDAAGNVGQASSSVTVKNAVA EEEEEECCEEEEEECCCCEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEE VTDASAPVISSFTMPASATSLTVPVTAFAATDDVGVTGYQITESATAPAAGATTWKATAP EECCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCEEEEECCCCCCCCCCCEEECCCC TSCTFSAAGIRTAYAWCKDASGKVSAAKTAQVNITTATTTTGDTTAPVVSIASPVTGSTV CCEEEECCCCEEEEHHHCCCCCCEEEEEEEEEEEEEEEECCCCCCCCEEEECCCCCCCEE KGAVTVSANATDNVGVKKAEFYVNGVLKLTSTTAPYSVTWGTTNYPNGSNSVTVKAYDAA EEEEEEECCCCCCCCCEEEEEEEEEEEEEEECCCCEEEECCCCCCCCCCCEEEEEEEECC GNVGQATSTVTIMNGDTTAPKVSITSPTSGSTAKGVVTVSANVTDNVGVKKVEFYVNGVL CCCCCCEEEEEEEECCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEE KLTSTAAPYTVTWGTTNYPNGSNSVTIKGYDAAGNVGQATTTVTVAN EEECCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEC >Mature Secondary Structure MKKLKAITATALGVLMYTSVASAAVLFSEDFNAQPDWSPSQGTSGATCIPGQNCATPIPT CCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCC GFYDYRLAGTEACSNLDGKHNTLNINGLHPRGTGKSFMMWNEPCYSRSGSWGSDGLLGID CCEEEEEECHHHHHCCCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEE FAPQNEVYVRYWIQFQPDWRWDGDGSVGGRAVGTATTSPMEKFMHISHLNTGNTNFWDFF ECCCCCEEEEEEEEECCCCCCCCCCCCCCEEEECCCCCHHHHHHEEEECCCCCCCEEEEC SGTQNKPRFTPQLAKFGGGSYRLQFNLPHSPLTAARDSSASFTTNVFLGAAPLDMNVPGP CCCCCCCCCCHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCC GGLPAAPRDGKWHCFEFYVKLNSAGGVADGVSKVWYDGALVGSTTNAVWIPLGDDPAQWK CCCCCCCCCCCEEEEEEEEEECCCCCCHHCCHHHEECCEEECCCCCEEEEECCCCCCCEE WNHAWLGGNNANLYLPANEQWYAIDDVVVSTTYSGPPAQPGSVTATASAANTVSLRWSPG EEEEEECCCCCEEEECCCCCEEEEEEEEEEEECCCCCCCCCCEEEEECCCEEEEEEECCC SNGVPFSLNGYRIYYGKDATNLNMKVDVGNVQQYSISSLDPSTKYYFAVSAYNKGSYDSN CCCCCEEECCEEEEECCCCCCEEEEEEECCCEEEEECCCCCCCEEEEEEEECCCCCCCCC DNEGMPSVTASATTVSSSTTTTTTADAVAPVASISSPATGSTVSGNVTINVAASDNVAVS CCCCCCCEEEEEEEECCCCCEEECHHHHHHHHHCCCCCCCCEEECCEEEEEECCCCEEEE KVELYLNGSIFGVVGSAPYTLSWNTANNPNATYTLTAKAYDAAGNVGQASSSVTVKNAVA EEEEEECCEEEEEECCCCEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEE VTDASAPVISSFTMPASATSLTVPVTAFAATDDVGVTGYQITESATAPAAGATTWKATAP EECCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCEEEEECCCCCCCCCCCEEECCCC TSCTFSAAGIRTAYAWCKDASGKVSAAKTAQVNITTATTTTGDTTAPVVSIASPVTGSTV CCEEEECCCCEEEEHHHCCCCCCEEEEEEEEEEEEEEEECCCCCCCCEEEECCCCCCCEE KGAVTVSANATDNVGVKKAEFYVNGVLKLTSTTAPYSVTWGTTNYPNGSNSVTVKAYDAA EEEEEEECCCCCCCCCEEEEEEEEEEEEEEECCCCEEEECCCCCCCCCCCEEEEEEEECC GNVGQATSTVTIMNGDTTAPKVSITSPTSGSTAKGVVTVSANVTDNVGVKKVEFYVNGVL CCCCCCEEEEEEEECCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEE KLTSTAAPYTVTWGTTNYPNGSNSVTIKGYDAAGNVGQATTTVTVAN EEECCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8969204 [H]