Click here to switch to the map view.

The map label for this gene is yjgF [C]

Identifier: 197118096

GI number: 197118096

Start: 1977908

End: 1978300

Strand: Direct

Name: yjgF [C]

Synonym: Gbem_1711

Alternate gene names: 197118096

Gene position: 1977908-1978300 (Clockwise)

Preceding gene: 197118095

Following gene: 197118097

Centisome position: 42.86

GC content: 54.2

Gene sequence:

>393_bases
ATGTCGCGTAATGCAATAACCGCCGAAAATGCAGTTGCCGTTGGTCCATATTCCCATGGCATAGATGCCGGCGACGCCAT
CTATTTGTCGAGACAGACGCCAATTGATCCAGCGACCGGACAGCTTGTTTCAGGCGGCATCACGGTTCAGGCCGAGCAGT
GCTTTGCGAACCTTTTCGCTGTGCTTAAGTCGGCCGGCCTCGATGAGGGCAGCGTGGTGAAGGTCAACGTTTTCCTGGTG
GATATGAGTGATTTTGCTGCCATGAATTCCGTCTATGAAAAGCAATTCACTCGGCCGTATCCGGCACGAACGACGATTGG
AGTTGCGTCGCTTCCGCTGGGGGCGAGGATAGAGATCGAACTGGTTGCCCGTAGAGAGAACAGGACGAGTTAG

Upstream 100 bases:

>100_bases
ATAGCGACCTTCGATTACAAAGGGGACTGGCTCCGCAAGGTGCCTGTCCCCCTTACAATGTCTCCCTTACCCCTGTCCCC
CTTACAAAGAGGAAAGCATC

Downstream 100 bases:

>100_bases
CTGCCATGAGAATTGAATGCCCTTCCTGTCAATTCGCTGCCGATGTCGACCCGGCGAAGGTCCCTACCAAAGGGGCGAAC
ACCAAGTGTCCACGTTGCTC

Product: YjgF/Yer057c/UK114 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 129

Protein sequence:

>130_residues
MSRNAITAENAVAVGPYSHGIDAGDAIYLSRQTPIDPATGQLVSGGITVQAEQCFANLFAVLKSAGLDEGSVVKVNVFLV
DMSDFAAMNSVYEKQFTRPYPARTTIGVASLPLGARIEIELVARRENRTS

Sequences:

>Translated_130_residues
MSRNAITAENAVAVGPYSHGIDAGDAIYLSRQTPIDPATGQLVSGGITVQAEQCFANLFAVLKSAGLDEGSVVKVNVFLV
DMSDFAAMNSVYEKQFTRPYPARTTIGVASLPLGARIEIELVARRENRTS
>Mature_129_residues
SRNAITAENAVAVGPYSHGIDAGDAIYLSRQTPIDPATGQLVSGGITVQAEQCFANLFAVLKSAGLDEGSVVKVNVFLVD
MSDFAAMNSVYEKQFTRPYPARTTIGVASLPLGARIEIELVARRENRTS

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=117, Percent_Identity=46.1538461538462, Blast_Score=110, Evalue=4e-25,
Organism=Escherichia coli, GI87082396, Length=128, Percent_Identity=41.40625, Blast_Score=102, Evalue=1e-23,
Organism=Escherichia coli, GI87082213, Length=116, Percent_Identity=37.9310344827586, Blast_Score=90, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI25148896, Length=124, Percent_Identity=48.3870967741936, Blast_Score=110, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI71982068, Length=124, Percent_Identity=48.3870967741936, Blast_Score=110, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI71982075, Length=124, Percent_Identity=48.3870967741936, Blast_Score=110, Evalue=2e-25,
Organism=Saccharomyces cerevisiae, GI6322138, Length=115, Percent_Identity=42.6086956521739, Blast_Score=96, Evalue=1e-21,
Organism=Saccharomyces cerevisiae, GI6320899, Length=100, Percent_Identity=44, Blast_Score=85, Evalue=4e-18,
Organism=Drosophila melanogaster, GI19921376, Length=117, Percent_Identity=42.7350427350427, Blast_Score=94, Evalue=3e-20,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13848; Mature: 13717

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRNAITAENAVAVGPYSHGIDAGDAIYLSRQTPIDPATGQLVSGGITVQAEQCFANLFA
CCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCCCCCEEECCEEEEHHHHHHHHHH
VLKSAGLDEGSVVKVNVFLVDMSDFAAMNSVYEKQFTRPYPARTTIGVASLPLGARIEIE
HHHHCCCCCCCEEEEEEEEEECHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCEEEEE
LVARRENRTS
EEEECCCCCC
>Mature Secondary Structure 
SRNAITAENAVAVGPYSHGIDAGDAIYLSRQTPIDPATGQLVSGGITVQAEQCFANLFA
CCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCCCCCEEECCEEEEHHHHHHHHHH
VLKSAGLDEGSVVKVNVFLVDMSDFAAMNSVYEKQFTRPYPARTTIGVASLPLGARIEIE
HHHHCCCCCCCEEEEEEEEEECHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCEEEEE
LVARRENRTS
EEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]