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The map label for this gene is ydcR [H]

Identifier: 197117195

GI number: 197117195

Start: 946873

End: 948315

Strand: Direct

Name: ydcR [H]

Synonym: Gbem_0803

Alternate gene names: 197117195

Gene position: 946873-948315 (Clockwise)

Preceding gene: 197117193

Following gene: 197117197

Centisome position: 20.52

GC content: 60.85

Gene sequence:

>1443_bases
ATGGCTTCGGAAACGGCAACAGACTGCAGGCCGCTGTATGAGAAGGTAGGGGGCGAGATAGTCGCGCTCATCGAAGGTGG
CACCTTCCGGGCTGGGGAACGGCTCCCCTCGATCAGGCAGCTCAGCTCAAAACTGAGCGTCAGCATCAACACGGTGATGC
AGGCGTACGCGGTCCTGGAGGACCGCCGGGTGATCCAGGCGCGCCCCCAGTCGGGGTACTACGTCTGCCCCCGCGCACCG
GAAATAACCGCTCATCCCGTCTCCTGCGGGCAAGGTTTTCGCGCCACCGCCGTCACCTTCAGCGATCTCTGCCAATTGGT
GATCCGCAATATGATGGAACCGGCAATGGTCCCTCTGGGAAGTGCGGTTCCCAATCCGCAGCACCTGCCGTTCGAGAAGC
TGAACCGGATCATGTCCGCCGAACTGAGGCGCTTCGGCTCCCAGAGCGTTTCCTACATGATGCCGCCGGGGAGCGAACGG
CTTCGGACCCAGATCGCCAAGCGCTCGCTTCTTTCCGGGATCAGCGTCACCCCGGACGAAGTGCTGGTGACTGCCGGCTG
TGTGGAGGCTGTTCAGCTCGCCTTGCGCGCAACCTGTCGCGCCGGCGATACCATCGCCGTCGAATCCCCCTTCTACTTTA
ACTTCCTGCAACTCATCGCGGAAATGGGACTGAAAGCGCTGGAAATTCCCTCCACCCCGAGGGAAGGGATATCGATAGAG
GCGCTTCGCTATGCCATCGAGAACAACAAGATCAGCGCCTGCCTGGTGATTCCCAACTTCAGCAACCCGCTGGGGAGTCT
GATGCCGGACGACAGGAAGCGCGAACTGGTTCAGCTCCTGGAAGGCCACGGCATCCCCCTTATCGAGGACGACATCTACG
GCGATCTCACCTTCGGCCAGCAGCGTCCGGTCGCGGCCAAATCGTTCGACAAGAAGGGGCTGGTCATCTACTGCTCTTCC
TTCTCCAAGACCCTGGCTCCCGGCTATCGGGTCGGGTGGGCAATCGGAGGGCGTTTCCAGGACGAGATGGAGCGGCTGAA
GATGATGACCAACCTTGCCGTCGCCTCACCGACCCAGCTTGCCCTGGCGGAGTTTCTCGCCAATGGCGGGTACGACCACC
ACCTGCGCGCCATCAGGCGCATCTATGCCAAGAACCTGTCCCAGATGTCGGAGGCGGTGGCGCGGTATTTCCCGGAAGGG
ACGCGGATGACGCGCCCCACAGGGAGCTTCATGCTGTGGGTGGAGATGCCGCAGGGGGTAGACTCGGTGAAGTTGTTTCA
CCGGGCATTGGAGCATCGCATCGGCATCACGCCGGGAGCCATATTCTCTCTCTCGGACAAGTACCGGAACTATATACGTC
TTTCATCGGCGTATTGGGATGACAAGTCGGAACGGGGAGTAGAGACCTTAGGTATGCTGGCCAAGGAGATACTGAAGTCC
TGA

Upstream 100 bases:

>100_bases
CCCATTCCAAATTGTGTAGACTGTATCTGGCGTGATTGGGCTCGTGGAGTAGAGTGAAGATGTCTTAAAGCAAACTGTGT
GAGCGGCGCTGGGGGGAGAT

Downstream 100 bases:

>100_bases
GGATGCAGCTGGCTGAGATGGGTTAGTGGGCCATGTGGATGAGTGAGCAGTTACGGCATTTGCCGTAGCGTGCGGGCAGG
TAGAGCAGGTTGATAGTCAG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 480; Mature: 479

Protein sequence:

>480_residues
MASETATDCRPLYEKVGGEIVALIEGGTFRAGERLPSIRQLSSKLSVSINTVMQAYAVLEDRRVIQARPQSGYYVCPRAP
EITAHPVSCGQGFRATAVTFSDLCQLVIRNMMEPAMVPLGSAVPNPQHLPFEKLNRIMSAELRRFGSQSVSYMMPPGSER
LRTQIAKRSLLSGISVTPDEVLVTAGCVEAVQLALRATCRAGDTIAVESPFYFNFLQLIAEMGLKALEIPSTPREGISIE
ALRYAIENNKISACLVIPNFSNPLGSLMPDDRKRELVQLLEGHGIPLIEDDIYGDLTFGQQRPVAAKSFDKKGLVIYCSS
FSKTLAPGYRVGWAIGGRFQDEMERLKMMTNLAVASPTQLALAEFLANGGYDHHLRAIRRIYAKNLSQMSEAVARYFPEG
TRMTRPTGSFMLWVEMPQGVDSVKLFHRALEHRIGITPGAIFSLSDKYRNYIRLSSAYWDDKSERGVETLGMLAKEILKS

Sequences:

>Translated_480_residues
MASETATDCRPLYEKVGGEIVALIEGGTFRAGERLPSIRQLSSKLSVSINTVMQAYAVLEDRRVIQARPQSGYYVCPRAP
EITAHPVSCGQGFRATAVTFSDLCQLVIRNMMEPAMVPLGSAVPNPQHLPFEKLNRIMSAELRRFGSQSVSYMMPPGSER
LRTQIAKRSLLSGISVTPDEVLVTAGCVEAVQLALRATCRAGDTIAVESPFYFNFLQLIAEMGLKALEIPSTPREGISIE
ALRYAIENNKISACLVIPNFSNPLGSLMPDDRKRELVQLLEGHGIPLIEDDIYGDLTFGQQRPVAAKSFDKKGLVIYCSS
FSKTLAPGYRVGWAIGGRFQDEMERLKMMTNLAVASPTQLALAEFLANGGYDHHLRAIRRIYAKNLSQMSEAVARYFPEG
TRMTRPTGSFMLWVEMPQGVDSVKLFHRALEHRIGITPGAIFSLSDKYRNYIRLSSAYWDDKSERGVETLGMLAKEILKS
>Mature_479_residues
ASETATDCRPLYEKVGGEIVALIEGGTFRAGERLPSIRQLSSKLSVSINTVMQAYAVLEDRRVIQARPQSGYYVCPRAPE
ITAHPVSCGQGFRATAVTFSDLCQLVIRNMMEPAMVPLGSAVPNPQHLPFEKLNRIMSAELRRFGSQSVSYMMPPGSERL
RTQIAKRSLLSGISVTPDEVLVTAGCVEAVQLALRATCRAGDTIAVESPFYFNFLQLIAEMGLKALEIPSTPREGISIEA
LRYAIENNKISACLVIPNFSNPLGSLMPDDRKRELVQLLEGHGIPLIEDDIYGDLTFGQQRPVAAKSFDKKGLVIYCSSF
SKTLAPGYRVGWAIGGRFQDEMERLKMMTNLAVASPTQLALAEFLANGGYDHHLRAIRRIYAKNLSQMSEAVARYFPEGT
RMTRPTGSFMLWVEMPQGVDSVKLFHRALEHRIGITPGAIFSLSDKYRNYIRLSSAYWDDKSERGVETLGMLAKEILKS

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=398, Percent_Identity=23.1155778894472, Blast_Score=90, Evalue=5e-18,
Organism=Homo sapiens, GI33469970, Length=398, Percent_Identity=23.1155778894472, Blast_Score=90, Evalue=5e-18,
Organism=Homo sapiens, GI4507369, Length=314, Percent_Identity=25.4777070063694, Blast_Score=88, Evalue=2e-17,
Organism=Escherichia coli, GI1787710, Length=470, Percent_Identity=36.8085106382979, Blast_Score=349, Evalue=3e-97,
Organism=Escherichia coli, GI1790797, Length=445, Percent_Identity=38.6516853932584, Blast_Score=330, Evalue=2e-91,
Organism=Escherichia coli, GI1786816, Length=237, Percent_Identity=25.3164556962025, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17567663, Length=307, Percent_Identity=23.4527687296417, Blast_Score=75, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6321000, Length=245, Percent_Identity=23.265306122449, Blast_Score=78, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6321236, Length=312, Percent_Identity=25.6410256410256, Blast_Score=77, Evalue=6e-15,
Organism=Drosophila melanogaster, GI21356535, Length=385, Percent_Identity=21.5584415584416, Blast_Score=81, Evalue=2e-15,
Organism=Drosophila melanogaster, GI18859735, Length=367, Percent_Identity=23.7057220708447, Blast_Score=80, Evalue=3e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53141; Mature: 53010

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASETATDCRPLYEKVGGEIVALIEGGTFRAGERLPSIRQLSSKLSVSINTVMQAYAVLE
CCCCCCHHHHHHHHHCCCEEEEEEECCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
DRRVIQARPQSGYYVCPRAPEITAHPVSCGQGFRATAVTFSDLCQLVIRNMMEPAMVPLG
HCHHHEECCCCCEEECCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCHHHCCCC
SAVPNPQHLPFEKLNRIMSAELRRFGSQSVSYMMPPGSERLRTQIAKRSLLSGISVTPDE
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCHHH
VLVTAGCVEAVQLALRATCRAGDTIAVESPFYFNFLQLIAEMGLKALEIPSTPREGISIE
HHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCEEECCCCCCCCCCHH
ALRYAIENNKISACLVIPNFSNPLGSLMPDDRKRELVQLLEGHGIPLIEDDIYGDLTFGQ
HHHHHHHCCCEEEEEEECCCCCCHHCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCC
QRPVAAKSFDKKGLVIYCSSFSKTLAPGYRVGWAIGGRFQDEMERLKMMTNLAVASPTQL
CCCCHHHCCCCCCEEEEECCCHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCHHH
ALAEFLANGGYDHHLRAIRRIYAKNLSQMSEAVARYFPEGTRMTRPTGSFMLWVEMPQGV
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCEEEEEECCCCC
DSVKLFHRALEHRIGITPGAIFSLSDKYRNYIRLSSAYWDDKSERGVETLGMLAKEILKS
HHHHHHHHHHHHHCCCCCCHHEECCHHHHHHEEEHHHCCCCCHHCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ASETATDCRPLYEKVGGEIVALIEGGTFRAGERLPSIRQLSSKLSVSINTVMQAYAVLE
CCCCCHHHHHHHHHCCCEEEEEEECCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
DRRVIQARPQSGYYVCPRAPEITAHPVSCGQGFRATAVTFSDLCQLVIRNMMEPAMVPLG
HCHHHEECCCCCEEECCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCHHHCCCC
SAVPNPQHLPFEKLNRIMSAELRRFGSQSVSYMMPPGSERLRTQIAKRSLLSGISVTPDE
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCHHH
VLVTAGCVEAVQLALRATCRAGDTIAVESPFYFNFLQLIAEMGLKALEIPSTPREGISIE
HHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCEEECCCCCCCCCCHH
ALRYAIENNKISACLVIPNFSNPLGSLMPDDRKRELVQLLEGHGIPLIEDDIYGDLTFGQ
HHHHHHHCCCEEEEEEECCCCCCHHCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCC
QRPVAAKSFDKKGLVIYCSSFSKTLAPGYRVGWAIGGRFQDEMERLKMMTNLAVASPTQL
CCCCHHHCCCCCCEEEEECCCHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCHHH
ALAEFLANGGYDHHLRAIRRIYAKNLSQMSEAVARYFPEGTRMTRPTGSFMLWVEMPQGV
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCEEEEEECCCCC
DSVKLFHRALEHRIGITPGAIFSLSDKYRNYIRLSSAYWDDKSERGVETLGMLAKEILKS
HHHHHHHHHHHHHCCCCCCHHEECCHHHHHHEEEHHHCCCCCHHCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]