| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is mcp043 [C]
Identifier: 197117166
GI number: 197117166
Start: 906091
End: 908559
Strand: Reverse
Name: mcp043 [C]
Synonym: Gbem_0771
Alternate gene names: 197117166
Gene position: 908559-906091 (Counterclockwise)
Preceding gene: 197117167
Following gene: 197117165
Centisome position: 19.69
GC content: 55.16
Gene sequence:
>2469_bases ATGAAAACCCGGTCTTGGCTCTATCTCAGTGCGGCAGTGATGTTTGGAGGCCTGGCTATCCTCGCTTCTCTGAGCATCCA TTCCATTTACAACATCCGGGGGATCGTCTCTCAACTGACCCACCGCTCCACTCCTCTGCAGATCAAGACTACGGAACTGC AGCGCTCCATCGAATCGCTCACCGGAGTGCTGTTGCGCCTAGGGGTCGCAAACGATAAGCGGGAGGTGACGGAGCTTTCC TCAGCGGTGGATGATCGACTCAAGACAGTTCAGACGGCTCTGGAGGGGATAAAGGCGCTCGACAAGGAGCACGCCGGGGC CATCGATGTTACGGTGATAAACACTGTTTACAACGATGTGAAGCGAGCGACCGACGAACGGATCCGGAGCCTGGACAACT TTCAACAGGAGTCCCGCAAGGTTAATGATGCCATCCAGAGCGTAGAGCAATCATTGGGGGGGGTGCGGCGGGATATGCAG ACCCTTAACGCAAGCGGATCAAAGCAGGTTTCCACTTCGGTGAATTCGTCAGTCCAGATCTTTACCTCGGCCCAGCAAGT GAAAGACGTCGTCATAACGCTGAAAGAGGTGCAGGTCATTCTGAAGGATCTGGATGCCGCCAAGGGTACGTCTGAAATAC TTGCCAATAAGTCCAAGCTCAGGAGCGCTAACACTGTAATCCAGGCAGTTACCAGCACTGATCCGGAGGTCGTCGAAGTT AAGAAATCGATGGAGGCCATTTATCAGCAGGTTACAAAGCCAGACACCGGTTTGGTCGCCTTGAAGCAGGCAATGCTTTC GGGCAGGGATTCGGGGGAAAAATTCCAAGAAGAAAAGAGAGCACTCAATAACCGTCTGCTTGAACTGATTCCCGGTTTGA CCACAGCCGTAGGACGAATGGAACTCCGCGCCGAAAAGAACCGCAAAGATGTGGATTCGGCCATGTCGACCAATCAGCGG ATCGACGGTGTAGGCGCAACGATAAACGCCGCTACGATTGCAACGAAGTCGATCGATGGAAAACTTCGCTCCTTGATGCT AAGCGAAGCGGCAAAAGACGCCAACACCTCTGCCGGTGAGCTTCGTTCCCTCTTTGCCCAAATCGGTCAGAACATTATCC GGGGACGCAAGGAGCTTGCTTTACTGAAACAGACGGCAGCACTAAGAAATGTCGATGCAGCAAGCACATCAATCCATGCC GCGGAAGCTTCGGTGGAGCGGATTATCGCGGCACAAATGAAGATCATCGAAAGCAATGACAAGGCGAAAAAAGCGCTGGA AATGGTCAAGGTCGCGGCCGACAAGGAACTGAAAACCGGTGAAGAGCTGGTAAAAAACACCGCGGATATTCAGGCGAAGA TGGTGGAGAAGACCAACTCCGTCTCAGCCAGGATGTCGGCCACCATCATTACCATGGCTATCATCATAGCGGTCCTTGCC GCAATCCCACTGCTGTACACGATCAGGCGCATCAACAGTTCCCTCTCCAGGGTCACCGATATGGTGAGGGATATCGCCGA AGGTGAGGGGGACATCACCAAGCGCCTTGACGAAGGAGGCAAGGATGAATTTGCCGTGCTTTCACACTGGTTCAACGTCT TTCTCAATAAACTGAACGCCATTCTGCAGCAGGTCTCCAGCACCACGGCCGATGTCTCGGCTGCGTCTTCCACGCTGCTT GACTCATCCCGGCAAATCTCAAAGGCCGCGGAAAGTGTCGCCGCTCAGGGGGCGTCGGCAGGGACTGCCTCCGAAGAGAT GGCCGCGACCGCCGCCGACATCTCCAATAACTGCCACACCGTTGCAGATAATTCCAGAAGCGCCGACGACGCCGCCCAGT CCGGTGCTGCCGTCTTACGCGAAACCCTCACCGTCATGGGGAGCATTGCGGAAAAGGTCAATAGGTCTGCTGAGACAGTC AGCACTCTTGGCCAAAGGGGAGACCAGATCGGCGCCATCGTCGCTACGATCCAGGACATCGCCGACCAAACGAACCTCCT GGCATTGAACGCCGCTATCGAGGCGGCTCGCGCCGGTGAACAGGGACGCGGCTTTGCCGTGGTCGCAGATGAGGTGAGAT CGCTGGCCGAACGGACCACCGAGGCCACCCGGGAGATTGGAGAAATGATTCACGGCATCCAAAGTGACACTCAGATGGCT GTCCGTTCCATGGCAGAAGGGGTCAAACAAGTTGAGGCCGGAACGGAAAAGGCTTCGGAGTCGGGTCAGGCATTGCAGCT CATCCTGGAGCAGATTGCCTCGCTTAACCTGCAGATCAGCCAGATTGCCACCGCTGCCGAACAACAGACAGCAACCACCA TCGAAATCAATACAGCCATCCAACACATGACCGACGAAGTGAGTGTGACCGCCAACGGCGCCCAGCATACAACAGATGCT GCTTCGAAGCTCTCCGAGCAAGCGACCACCTTAAGCCACCTTGTCGGGCAGTTTAAACTAAGTATGTAG
Upstream 100 bases:
>100_bases CATCCCAAGAACGAAGCCCCTTGAGCAAAAACCACCTATTTCAAGAAGATAGACGAACAGGTTCTGAGCTGCGGCATTTA TAAGAAGTAGGAGATAATCA
Downstream 100 bases:
>100_bases TTGAGAAGAACAGGTGTCATAGTCATGGCATGAGGTTCGGGGGACATAGGTCAAGGGGGGTCAGGCTAGACATCCGGGTC AAGGGGGGTCAGGCTAGACA
Product: methyl-accepting chemotaxis sensory transducer
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 822; Mature: 822
Protein sequence:
>822_residues MKTRSWLYLSAAVMFGGLAILASLSIHSIYNIRGIVSQLTHRSTPLQIKTTELQRSIESLTGVLLRLGVANDKREVTELS SAVDDRLKTVQTALEGIKALDKEHAGAIDVTVINTVYNDVKRATDERIRSLDNFQQESRKVNDAIQSVEQSLGGVRRDMQ TLNASGSKQVSTSVNSSVQIFTSAQQVKDVVITLKEVQVILKDLDAAKGTSEILANKSKLRSANTVIQAVTSTDPEVVEV KKSMEAIYQQVTKPDTGLVALKQAMLSGRDSGEKFQEEKRALNNRLLELIPGLTTAVGRMELRAEKNRKDVDSAMSTNQR IDGVGATINAATIATKSIDGKLRSLMLSEAAKDANTSAGELRSLFAQIGQNIIRGRKELALLKQTAALRNVDAASTSIHA AEASVERIIAAQMKIIESNDKAKKALEMVKVAADKELKTGEELVKNTADIQAKMVEKTNSVSARMSATIITMAIIIAVLA AIPLLYTIRRINSSLSRVTDMVRDIAEGEGDITKRLDEGGKDEFAVLSHWFNVFLNKLNAILQQVSSTTADVSAASSTLL DSSRQISKAAESVAAQGASAGTASEEMAATAADISNNCHTVADNSRSADDAAQSGAAVLRETLTVMGSIAEKVNRSAETV STLGQRGDQIGAIVATIQDIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAERTTEATREIGEMIHGIQSDTQMA VRSMAEGVKQVEAGTEKASESGQALQLILEQIASLNLQISQIATAAEQQTATTIEINTAIQHMTDEVSVTANGAQHTTDA ASKLSEQATTLSHLVGQFKLSM
Sequences:
>Translated_822_residues MKTRSWLYLSAAVMFGGLAILASLSIHSIYNIRGIVSQLTHRSTPLQIKTTELQRSIESLTGVLLRLGVANDKREVTELS SAVDDRLKTVQTALEGIKALDKEHAGAIDVTVINTVYNDVKRATDERIRSLDNFQQESRKVNDAIQSVEQSLGGVRRDMQ TLNASGSKQVSTSVNSSVQIFTSAQQVKDVVITLKEVQVILKDLDAAKGTSEILANKSKLRSANTVIQAVTSTDPEVVEV KKSMEAIYQQVTKPDTGLVALKQAMLSGRDSGEKFQEEKRALNNRLLELIPGLTTAVGRMELRAEKNRKDVDSAMSTNQR IDGVGATINAATIATKSIDGKLRSLMLSEAAKDANTSAGELRSLFAQIGQNIIRGRKELALLKQTAALRNVDAASTSIHA AEASVERIIAAQMKIIESNDKAKKALEMVKVAADKELKTGEELVKNTADIQAKMVEKTNSVSARMSATIITMAIIIAVLA AIPLLYTIRRINSSLSRVTDMVRDIAEGEGDITKRLDEGGKDEFAVLSHWFNVFLNKLNAILQQVSSTTADVSAASSTLL DSSRQISKAAESVAAQGASAGTASEEMAATAADISNNCHTVADNSRSADDAAQSGAAVLRETLTVMGSIAEKVNRSAETV STLGQRGDQIGAIVATIQDIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAERTTEATREIGEMIHGIQSDTQMA VRSMAEGVKQVEAGTEKASESGQALQLILEQIASLNLQISQIATAAEQQTATTIEINTAIQHMTDEVSVTANGAQHTTDA ASKLSEQATTLSHLVGQFKLSM >Mature_822_residues MKTRSWLYLSAAVMFGGLAILASLSIHSIYNIRGIVSQLTHRSTPLQIKTTELQRSIESLTGVLLRLGVANDKREVTELS SAVDDRLKTVQTALEGIKALDKEHAGAIDVTVINTVYNDVKRATDERIRSLDNFQQESRKVNDAIQSVEQSLGGVRRDMQ TLNASGSKQVSTSVNSSVQIFTSAQQVKDVVITLKEVQVILKDLDAAKGTSEILANKSKLRSANTVIQAVTSTDPEVVEV KKSMEAIYQQVTKPDTGLVALKQAMLSGRDSGEKFQEEKRALNNRLLELIPGLTTAVGRMELRAEKNRKDVDSAMSTNQR IDGVGATINAATIATKSIDGKLRSLMLSEAAKDANTSAGELRSLFAQIGQNIIRGRKELALLKQTAALRNVDAASTSIHA AEASVERIIAAQMKIIESNDKAKKALEMVKVAADKELKTGEELVKNTADIQAKMVEKTNSVSARMSATIITMAIIIAVLA AIPLLYTIRRINSSLSRVTDMVRDIAEGEGDITKRLDEGGKDEFAVLSHWFNVFLNKLNAILQQVSSTTADVSAASSTLL DSSRQISKAAESVAAQGASAGTASEEMAATAADISNNCHTVADNSRSADDAAQSGAAVLRETLTVMGSIAEKVNRSAETV STLGQRGDQIGAIVATIQDIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAERTTEATREIGEMIHGIQSDTQMA VRSMAEGVKQVEAGTEKASESGQALQLILEQIASLNLQISQIATAAEQQTATTIEINTAIQHMTDEVSVTANGAQHTTDA ASKLSEQATTLSHLVGQFKLSM
Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 methyl-accepting transducer domain [H]
Homologues:
Organism=Escherichia coli, GI1787690, Length=365, Percent_Identity=27.9452054794521, Blast_Score=121, Evalue=2e-28, Organism=Escherichia coli, GI2367378, Length=319, Percent_Identity=29.153605015674, Blast_Score=112, Evalue=8e-26, Organism=Escherichia coli, GI1788194, Length=359, Percent_Identity=28.6908077994429, Blast_Score=104, Evalue=2e-23, Organism=Escherichia coli, GI1788195, Length=307, Percent_Identity=28.6644951140065, Blast_Score=104, Evalue=2e-23, Organism=Escherichia coli, GI1789453, Length=315, Percent_Identity=26.6666666666667, Blast_Score=88, Evalue=2e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004010 - InterPro: IPR003122 - InterPro: IPR004089 - InterPro: IPR003660 - InterPro: IPR022094 [H]
Pfam domain/function: PF02743 Cache_1; PF00672 HAMP; PF12332 McpA_N; PF00015 MCPsignal; PF02203 TarH [H]
EC number: NA
Molecular weight: Translated: 87833; Mature: 87833
Theoretical pI: Translated: 5.95; Mature: 5.95
Prosite motif: PS50885 HAMP ; PS00584 PFKB_KINASES_2 ; PS01096 PPIC_PPIASE_1 ; PS50111 CHEMOTAXIS_TRANSDUC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTRSWLYLSAAVMFGGLAILASLSIHSIYNIRGIVSQLTHRSTPLQIKTTELQRSIESL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHH TGVLLRLGVANDKREVTELSSAVDDRLKTVQTALEGIKALDKEHAGAIDVTVINTVYNDV HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHH KRATDERIRSLDNFQQESRKVNDAIQSVEQSLGGVRRDMQTLNASGSKQVSTSVNSSVQI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHH FTSAQQVKDVVITLKEVQVILKDLDAAKGTSEILANKSKLRSANTVIQAVTSTDPEVVEV HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH KKSMEAIYQQVTKPDTGLVALKQAMLSGRDSGEKFQEEKRALNNRLLELIPGLTTAVGRM HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHH ELRAEKNRKDVDSAMSTNQRIDGVGATINAATIATKSIDGKLRSLMLSEAAKDANTSAGE HHHHHHCHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH LRSLFAQIGQNIIRGRKELALLKQTAALRNVDAASTSIHAAEASVERIIAAQMKIIESND HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCH KAKKALEMVKVAADKELKTGEELVKNTADIQAKMVEKTNSVSARMSATIITMAIIIAVLA HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AIPLLYTIRRINSSLSRVTDMVRDIAEGEGDITKRLDEGGKDEFAVLSHWFNVFLNKLNA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH ILQQVSSTTADVSAASSTLLDSSRQISKAAESVAAQGASAGTASEEMAATAADISNNCHT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCC VADNSRSADDAAQSGAAVLRETLTVMGSIAEKVNRSAETVSTLGQRGDQIGAIVATIQDI CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHH ADQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAERTTEATREIGEMIHGIQSDTQMA HCCCCEEHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH VRSMAEGVKQVEAGTEKASESGQALQLILEQIASLNLQISQIATAAEQQTATTIEINTAI HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEHHHHH QHMTDEVSVTANGAQHTTDAASKLSEQATTLSHLVGQFKLSM HHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKTRSWLYLSAAVMFGGLAILASLSIHSIYNIRGIVSQLTHRSTPLQIKTTELQRSIESL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHH TGVLLRLGVANDKREVTELSSAVDDRLKTVQTALEGIKALDKEHAGAIDVTVINTVYNDV HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHH KRATDERIRSLDNFQQESRKVNDAIQSVEQSLGGVRRDMQTLNASGSKQVSTSVNSSVQI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHH FTSAQQVKDVVITLKEVQVILKDLDAAKGTSEILANKSKLRSANTVIQAVTSTDPEVVEV HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH KKSMEAIYQQVTKPDTGLVALKQAMLSGRDSGEKFQEEKRALNNRLLELIPGLTTAVGRM HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHH ELRAEKNRKDVDSAMSTNQRIDGVGATINAATIATKSIDGKLRSLMLSEAAKDANTSAGE HHHHHHCHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH LRSLFAQIGQNIIRGRKELALLKQTAALRNVDAASTSIHAAEASVERIIAAQMKIIESND HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCH KAKKALEMVKVAADKELKTGEELVKNTADIQAKMVEKTNSVSARMSATIITMAIIIAVLA HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AIPLLYTIRRINSSLSRVTDMVRDIAEGEGDITKRLDEGGKDEFAVLSHWFNVFLNKLNA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH ILQQVSSTTADVSAASSTLLDSSRQISKAAESVAAQGASAGTASEEMAATAADISNNCHT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCC VADNSRSADDAAQSGAAVLRETLTVMGSIAEKVNRSAETVSTLGQRGDQIGAIVATIQDI CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHH ADQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAERTTEATREIGEMIHGIQSDTQMA HCCCCEEHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH VRSMAEGVKQVEAGTEKASESGQALQLILEQIASLNLQISQIATAAEQQTATTIEINTAI HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEHHHHH QHMTDEVSVTANGAQHTTDAASKLSEQATTLSHLVGQFKLSM HHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA