| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197117119
Identifier: 197117119
GI number: 197117119
Start: 856054
End: 856953
Strand: Direct
Name: 197117119
Synonym: Gbem_0724
Alternate gene names: NA
Gene position: 856054-856953 (Clockwise)
Preceding gene: 197117118
Following gene: 197117120
Centisome position: 18.55
GC content: 59.11
Gene sequence:
>900_bases ATGATCGAAGGCATTTTTGTTGAAGGGCTTATTTACGGCATCATGGTTCTCGGGGTGTTCATCTCCTTCCGGATCCTCGA CTTTCCCGACCTTACCGTCGACGGTTCCTTTCCCCTGGGGGCCGCTCTCATGGTGCAGTGCCTCCTCATGGGGATGAACG GCTGGCTCGCGCTTCTGGTGGCCTTTGCCGGCGGTGTTACGGCAGGCGCCGTCACGGCGCTGATCCACAACCACTTAAGG GTGCCGAACCTTTTGGCCGGTATCCTCACCATGACCATGCTCTACTCGGTCAACATCCGCATTCTGGGCAACCGCGCCAA TGTCCCCATCCTGGATCAGCCGACCCTCCTGAAGCAGGTCACCGAGAAGTTCACCGGCATCATCCCGGACGAGTACATCC TCCTGGTGTTTTTCCTGGTCGTCGCCCTGGTGGTAAAGGTGCTGCTCGACCTCTTTTTCCGCACCGACCTCGGCATGACC CTGGGCGCCATGGGGAATAACGAGCAGATGGTCATCTCGCAGGGGGTGAACCCCAAGACCCTGAAGACCATCGGGGTCGG CCTCTCCAACGGCCTGGTCGCAGTCTCCGGCGCCTTTGCCGCGCAGTACCTGGGCTTTGCCGACGTGGGGCTGGGCCAGG GAATAATCGTTTCCGGCCTGGCTTCGGTCATGATCGGCGAATTCCTGATGCTCAAGAGCAACCGGATCGGTGTGCTCACC TTCTGTGCGCTTGCCGGTTCCATCTGCTTTTACGCCGTCATGTATGTCGGGCGCTTCTACGGGTACCTCATCCACATGAC CCCGAGCGACCTGAACCTCATCAAGGGCGTGCTGATCATCGTCCTGCTCATCGCGACCCAGGCGAAGAAACTGAAGGTCT CGTTTAAGGTGGCAAAATGA
Upstream 100 bases:
>100_bases TCAGAAGTTCGTAGCTTGCCCACCGTAGCGCTTCAGCGCGTAGGTGGGTGCCAATGGTTTTGATTTTTTTGTTTCTTCAG AAGGGTAAACGGTTCCAGTT
Downstream 100 bases:
>100_bases TCGAGCTTAAAAACGTTTCCGTCGTCTTTGGCCAGGGGACCATCAACGAAAACAAGGCCCTGAAGAACATCAACCTCAAG GTGAAAGAAGGCGACTTCAT
Product: ABC transporter membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 299; Mature: 299
Protein sequence:
>299_residues MIEGIFVEGLIYGIMVLGVFISFRILDFPDLTVDGSFPLGAALMVQCLLMGMNGWLALLVAFAGGVTAGAVTALIHNHLR VPNLLAGILTMTMLYSVNIRILGNRANVPILDQPTLLKQVTEKFTGIIPDEYILLVFFLVVALVVKVLLDLFFRTDLGMT LGAMGNNEQMVISQGVNPKTLKTIGVGLSNGLVAVSGAFAAQYLGFADVGLGQGIIVSGLASVMIGEFLMLKSNRIGVLT FCALAGSICFYAVMYVGRFYGYLIHMTPSDLNLIKGVLIIVLLIATQAKKLKVSFKVAK
Sequences:
>Translated_299_residues MIEGIFVEGLIYGIMVLGVFISFRILDFPDLTVDGSFPLGAALMVQCLLMGMNGWLALLVAFAGGVTAGAVTALIHNHLR VPNLLAGILTMTMLYSVNIRILGNRANVPILDQPTLLKQVTEKFTGIIPDEYILLVFFLVVALVVKVLLDLFFRTDLGMT LGAMGNNEQMVISQGVNPKTLKTIGVGLSNGLVAVSGAFAAQYLGFADVGLGQGIIVSGLASVMIGEFLMLKSNRIGVLT FCALAGSICFYAVMYVGRFYGYLIHMTPSDLNLIKGVLIIVLLIATQAKKLKVSFKVAK >Mature_299_residues MIEGIFVEGLIYGIMVLGVFISFRILDFPDLTVDGSFPLGAALMVQCLLMGMNGWLALLVAFAGGVTAGAVTALIHNHLR VPNLLAGILTMTMLYSVNIRILGNRANVPILDQPTLLKQVTEKFTGIIPDEYILLVFFLVVALVVKVLLDLFFRTDLGMT LGAMGNNEQMVISQGVNPKTLKTIGVGLSNGLVAVSGAFAAQYLGFADVGLGQGIIVSGLASVMIGEFLMLKSNRIGVLT FCALAGSICFYAVMYVGRFYGYLIHMTPSDLNLIKGVLIIVLLIATQAKKLKVSFKVAK
Specific function: Unknown
COG id: COG4120
COG function: function code R; ABC-type uncharacterized transport system, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001851 [H]
Pfam domain/function: PF02653 BPD_transp_2 [H]
EC number: NA
Molecular weight: Translated: 32012; Mature: 32012
Theoretical pI: Translated: 9.07; Mature: 9.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIEGIFVEGLIYGIMVLGVFISFRILDFPDLTVDGSFPLGAALMVQCLLMGMNGWLALLV CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHCCCHHHHHHH AFAGGVTAGAVTALIHNHLRVPNLLAGILTMTMLYSVNIRILGNRANVPILDQPTLLKQV HHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCHHHHHH TEKFTGIIPDEYILLVFFLVVALVVKVLLDLFFRTDLGMTLGAMGNNEQMVISQGVNPKT HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEEEEECCCCCHH LKTIGVGLSNGLVAVSGAFAAQYLGFADVGLGQGIIVSGLASVMIGEFLMLKSNRIGVLT HHHHHCCCCCCEEEEHHHHHHHHHCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH FCALAGSICFYAVMYVGRFYGYLIHMTPSDLNLIKGVLIIVLLIATQAKKLKVSFKVAK HHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHCCCHHEEEEEEECC >Mature Secondary Structure MIEGIFVEGLIYGIMVLGVFISFRILDFPDLTVDGSFPLGAALMVQCLLMGMNGWLALLV CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHCCCHHHHHHH AFAGGVTAGAVTALIHNHLRVPNLLAGILTMTMLYSVNIRILGNRANVPILDQPTLLKQV HHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCHHHHHH TEKFTGIIPDEYILLVFFLVVALVVKVLLDLFFRTDLGMTLGAMGNNEQMVISQGVNPKT HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEEEEECCCCCHH LKTIGVGLSNGLVAVSGAFAAQYLGFADVGLGQGIIVSGLASVMIGEFLMLKSNRIGVLT HHHHHCCCCCCEEEEHHHHHHHHHCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH FCALAGSICFYAVMYVGRFYGYLIHMTPSDLNLIKGVLIIVLLIATQAKKLKVSFKVAK HHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHCCCHHEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9823893 [H]