Definition Geobacter bemidjiensis Bem chromosome, complete genome.
Accession NC_011146
Length 4,615,150

Click here to switch to the map view.

The map label for this gene is 197117115

Identifier: 197117115

GI number: 197117115

Start: 851509

End: 852195

Strand: Direct

Name: 197117115

Synonym: Gbem_0720

Alternate gene names: NA

Gene position: 851509-852195 (Clockwise)

Preceding gene: 197117113

Following gene: 197117116

Centisome position: 18.45

GC content: 58.81

Gene sequence:

>687_bases
ATGTCAGAAATAAGGATACTCATAGTCGTAAAAGATGCTGAGACAGCCAGCGCGTACGTCGATGCGGTGACAGAGAGTGG
AGCCACCTGTGACGTCGCGCACTCCTTCCAGGAGATGTCCGCCCTGGCGACAGACAGGGTCTACAACGGTATTGTCGTCG
ACATCCTTACCTTGGTGCGCTGCAGCAAGGAAGAGAAAGTCATAGCCTACGAGATTATCAACCTCTTCCCGGTATTGCGG
GTCAAGTGGGAGCCGCGGCACAAGAAGATCAAGCTGACCCCGCTGGAGCAGAGCTTTTCGCCGGACACCGACTCGGCGCT
TAGGTTTTTCATCCAGACCCGCTGCAAGGCCTTTCCCGCGCGGTCGCTGCGCAAGGAGAAGCGCAAGCTGGTCAACCTGA
ACCTGCTTTACTGCCGTGACAACCGCTTCCTGGACGGGGAGGCGTGCAAGTCGTTCACCATCAACATCAGTCCGACCGGG
GTGTTTCTGCACACAATGGAGGAATTCCGGGTCGGCGAAACGATCTGGCTCCGTTTTCTGGAGTTCGCCGACCAGACCCC
AGTCGAGGCCACCGTCTGCTGGTCGCAGCGGTGGGGAGTCACCCGCTGCGTCCCCGGCGCCGGCGTCAAGTTCGAGTCTC
TTACCGAGAGCCAGAGGCAGGACGTAGATCGCATCGTCAACCTCTGA

Upstream 100 bases:

>100_bases
CCGAATGCGGTGACTTCAGACTTTCGCAATGCAGCAAGCTTTAAAAGCCATCCGTCGATTACTCCAGTAGCCTCATGGCA
CCAAAGGAAGAAATACTCCG

Downstream 100 bases:

>100_bases
ACCCTTCCCCAGCAGGAAATTCCATGTGCACTCTGCTTTTGGCCTGCCGCGCCCATCCGCGTTACCCCCTTGTCCTCCTC
GCCAACAGGGACGAGTACTA

Product: PilZ domain-containing protein

Products: NA

Alternate protein names: PilZ Domain-Containing Protein

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MSEIRILIVVKDAETASAYVDAVTESGATCDVAHSFQEMSALATDRVYNGIVVDILTLVRCSKEEKVIAYEIINLFPVLR
VKWEPRHKKIKLTPLEQSFSPDTDSALRFFIQTRCKAFPARSLRKEKRKLVNLNLLYCRDNRFLDGEACKSFTINISPTG
VFLHTMEEFRVGETIWLRFLEFADQTPVEATVCWSQRWGVTRCVPGAGVKFESLTESQRQDVDRIVNL

Sequences:

>Translated_228_residues
MSEIRILIVVKDAETASAYVDAVTESGATCDVAHSFQEMSALATDRVYNGIVVDILTLVRCSKEEKVIAYEIINLFPVLR
VKWEPRHKKIKLTPLEQSFSPDTDSALRFFIQTRCKAFPARSLRKEKRKLVNLNLLYCRDNRFLDGEACKSFTINISPTG
VFLHTMEEFRVGETIWLRFLEFADQTPVEATVCWSQRWGVTRCVPGAGVKFESLTESQRQDVDRIVNL
>Mature_227_residues
SEIRILIVVKDAETASAYVDAVTESGATCDVAHSFQEMSALATDRVYNGIVVDILTLVRCSKEEKVIAYEIINLFPVLRV
KWEPRHKKIKLTPLEQSFSPDTDSALRFFIQTRCKAFPARSLRKEKRKLVNLNLLYCRDNRFLDGEACKSFTINISPTGV
FLHTMEEFRVGETIWLRFLEFADQTPVEATVCWSQRWGVTRCVPGAGVKFESLTESQRQDVDRIVNL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26057; Mature: 25926

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEIRILIVVKDAETASAYVDAVTESGATCDVAHSFQEMSALATDRVYNGIVVDILTLVR
CCCEEEEEEEECCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
CSKEEKVIAYEIINLFPVLRVKWEPRHKKIKLTPLEQSFSPDTDSALRFFIQTRCKAFPA
CCCCCCCHHHHHHHHHHEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCH
RSLRKEKRKLVNLNLLYCRDNRFLDGEACKSFTINISPTGVFLHTMEEFRVGETIWLRFL
HHHHHHHHHHCCEEEEEEECCCEECCCCCCEEEEEECCCEEEEEEHHHHCCCHHHHHHHH
EFADQTPVEATVCWSQRWGVTRCVPGAGVKFESLTESQRQDVDRIVNL
HHCCCCCCEEEEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SEIRILIVVKDAETASAYVDAVTESGATCDVAHSFQEMSALATDRVYNGIVVDILTLVR
CCEEEEEEEECCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
CSKEEKVIAYEIINLFPVLRVKWEPRHKKIKLTPLEQSFSPDTDSALRFFIQTRCKAFPA
CCCCCCCHHHHHHHHHHEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCH
RSLRKEKRKLVNLNLLYCRDNRFLDGEACKSFTINISPTGVFLHTMEEFRVGETIWLRFL
HHHHHHHHHHCCEEEEEEECCCEECCCCCCEEEEEECCCEEEEEEHHHHCCCHHHHHHHH
EFADQTPVEATVCWSQRWGVTRCVPGAGVKFESLTESQRQDVDRIVNL
HHCCCCCCEEEEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA