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The map label for this gene is yhcC-2 [H]

Identifier: 197117048

GI number: 197117048

Start: 773755

End: 774711

Strand: Reverse

Name: yhcC-2 [H]

Synonym: Gbem_0651

Alternate gene names: 197117048

Gene position: 774711-773755 (Counterclockwise)

Preceding gene: 197117049

Following gene: 197117047

Centisome position: 16.79

GC content: 64.79

Gene sequence:

>957_bases
ATGACCGGATCCCCCATCCATAGCGAGCTCCGCATCAACTCCTACGGCTCCTACCTGAGAAGGCGCTTTTCCTGCCGCGT
CTCCAAGGTGAACGTGGACGGCGGCTTCACCTGCCCCAACCGCGACGGCAGCCGCGGCACCGGCGGCTGCATCTACTGCG
ACAACAGCTCGTTCTCCCCCAAGGAGACGGTAGCCGTCATACCCATCGAGGAGCAGATGGCGGCCGGGATGGCCTATCAC
CGGACCCGCCTGGCGAGCGAGAAGTTCATCGTCTATTTCCAGAAATTCACCAACACCTACGCGCCCGTGGAGAAGCTCTC
CGATCTGTACCGGCGCGCGCTTTCGCATCCGGACGTGGTGGGGATCTCGGTCGGCACCAGGCCCGACTCGATCGACGACG
ACGCCGTGGCGCTTCTGACCGAGCTTGCCCGCGACCGCTACGTCTGCGTGGAACTGGGGCTTCAGTCCATCGACGACGCC
ATCCTCACCGGCATCAACCGCGGCCACACCTTCGCCGAGTACCTCTCAACCGTGGACCGGCTTGCCGGGCGCGGCATCGA
CATCTGCACCCACCTTATCTACGGCTTTCCCGGGGAAAAGAGGAGCGGCTTCGTCAAGGGGGCGCGGCTCATCTCCTCGC
TCCCGGTGACCGCGGTGAAGCTGCACCAGCTGCACGCGGTGGAGGGAACCAAGCTCGCCCGCATGTACCGCGACGGGAGC
TACCTCCCCATCTCCCTTGCCGAATACGTAGGTGCGGCCTGCGACTTCCTGGAAGAGCTCTCGCCCAAGGTCTCGATCCA
GAGGCTATACGGCTCGGCGCCCCTCTCCATCCGGGTCGCGCCCAACTGGAACCTGAAGAACAACCAGATGTGGTACGCGG
TGGTGAACGAGCTGAAAAGGCGCGGCAGCTGGCAGGGGTGCCGGGTGGGTTGCGAGATGCGCGCGGTGAACGGCTAG

Upstream 100 bases:

>100_bases
GCGTCGCGCTCATCTCCGCCGTCCTCTCCGCAGCCGACCCGCGCGAGGCGGCGAAGAAGCTCATCGCCCTTCTCCCCCCC
CTGGAGCACGCCGACTGAAC

Downstream 100 bases:

>100_bases
CTAAAGCGAGGAGAAACATGAAGACGGCAAGGGTCAAGGGAGAAGCAAAAGAGTATCGGATCGGCAAGATCCTCTGCATC
GGGAGGAACTACGCGGACCA

Product: radical SAM protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MTGSPIHSELRINSYGSYLRRRFSCRVSKVNVDGGFTCPNRDGSRGTGGCIYCDNSSFSPKETVAVIPIEEQMAAGMAYH
RTRLASEKFIVYFQKFTNTYAPVEKLSDLYRRALSHPDVVGISVGTRPDSIDDDAVALLTELARDRYVCVELGLQSIDDA
ILTGINRGHTFAEYLSTVDRLAGRGIDICTHLIYGFPGEKRSGFVKGARLISSLPVTAVKLHQLHAVEGTKLARMYRDGS
YLPISLAEYVGAACDFLEELSPKVSIQRLYGSAPLSIRVAPNWNLKNNQMWYAVVNELKRRGSWQGCRVGCEMRAVNG

Sequences:

>Translated_318_residues
MTGSPIHSELRINSYGSYLRRRFSCRVSKVNVDGGFTCPNRDGSRGTGGCIYCDNSSFSPKETVAVIPIEEQMAAGMAYH
RTRLASEKFIVYFQKFTNTYAPVEKLSDLYRRALSHPDVVGISVGTRPDSIDDDAVALLTELARDRYVCVELGLQSIDDA
ILTGINRGHTFAEYLSTVDRLAGRGIDICTHLIYGFPGEKRSGFVKGARLISSLPVTAVKLHQLHAVEGTKLARMYRDGS
YLPISLAEYVGAACDFLEELSPKVSIQRLYGSAPLSIRVAPNWNLKNNQMWYAVVNELKRRGSWQGCRVGCEMRAVNG
>Mature_317_residues
TGSPIHSELRINSYGSYLRRRFSCRVSKVNVDGGFTCPNRDGSRGTGGCIYCDNSSFSPKETVAVIPIEEQMAAGMAYHR
TRLASEKFIVYFQKFTNTYAPVEKLSDLYRRALSHPDVVGISVGTRPDSIDDDAVALLTELARDRYVCVELGLQSIDDAI
LTGINRGHTFAEYLSTVDRLAGRGIDICTHLIYGFPGEKRSGFVKGARLISSLPVTAVKLHQLHAVEGTKLARMYRDGSY
LPISLAEYVGAACDFLEELSPKVSIQRLYGSAPLSIRVAPNWNLKNNQMWYAVVNELKRRGSWQGCRVGCEMRAVNG

Specific function: Unknown

COG id: COG1242

COG function: function code R; Predicted Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI2367204, Length=275, Percent_Identity=37.4545454545455, Blast_Score=191, Evalue=5e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR005911
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 35218; Mature: 35086

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGSPIHSELRINSYGSYLRRRFSCRVSKVNVDGGFTCPNRDGSRGTGGCIYCDNSSFSP
CCCCCCCCCEEECHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCC
KETVAVIPIEEQMAAGMAYHRTRLASEKFIVYFQKFTNTYAPVEKLSDLYRRALSHPDVV
CCEEEEEECHHHHHHHHHHHHHHHCCCHHEEEEHHHCCCCCCHHHHHHHHHHHCCCCCEE
GISVGTRPDSIDDDAVALLTELARDRYVCVELGLQSIDDAILTGINRGHTFAEYLSTVDR
EEEECCCCCCCCHHHHHHHHHHHHCCEEEEHHCHHHHHHHHHHCCCCCCHHHHHHHHHHH
LAGRGIDICTHLIYGFPGEKRSGFVKGARLISSLPVTAVKLHQLHAVEGTKLARMYRDGS
HHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHCCCC
YLPISLAEYVGAACDFLEELSPKVSIQRLYGSAPLSIRVAPNWNLKNNQMWYAVVNELKR
CCEEHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEECCCCCCCCCEEHHHHHHHHHH
RGSWQGCRVGCEMRAVNG
CCCCCCCEECCEEEECCC
>Mature Secondary Structure 
TGSPIHSELRINSYGSYLRRRFSCRVSKVNVDGGFTCPNRDGSRGTGGCIYCDNSSFSP
CCCCCCCCEEECHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCC
KETVAVIPIEEQMAAGMAYHRTRLASEKFIVYFQKFTNTYAPVEKLSDLYRRALSHPDVV
CCEEEEEECHHHHHHHHHHHHHHHCCCHHEEEEHHHCCCCCCHHHHHHHHHHHCCCCCEE
GISVGTRPDSIDDDAVALLTELARDRYVCVELGLQSIDDAILTGINRGHTFAEYLSTVDR
EEEECCCCCCCCHHHHHHHHHHHHCCEEEEHHCHHHHHHHHHHCCCCCCHHHHHHHHHHH
LAGRGIDICTHLIYGFPGEKRSGFVKGARLISSLPVTAVKLHQLHAVEGTKLARMYRDGS
HHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHCCCC
YLPISLAEYVGAACDFLEELSPKVSIQRLYGSAPLSIRVAPNWNLKNNQMWYAVVNELKR
CCEEHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEECCCCCCCCCEEHHHHHHHHHH
RGSWQGCRVGCEMRAVNG
CCCCCCCEECCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]