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The map label for this gene is ykoX [H]

Identifier: 197117008

GI number: 197117008

Start: 731173

End: 731799

Strand: Reverse

Name: ykoX [H]

Synonym: Gbem_0611

Alternate gene names: 197117008

Gene position: 731799-731173 (Counterclockwise)

Preceding gene: 197117014

Following gene: 197117004

Centisome position: 15.86

GC content: 61.24

Gene sequence:

>627_bases
ATGCATGCAGTAGTGGATTGGCTGTTACAGACCATCGGGGCGCTGGGGTATCCCGGCATATTCCTCCTGATGGCGATGGA
AAGTTCCATCATCCCCATCCCCAGCGAGCTGGTGATGCCCCCGGCAGGGTACCTGGCCCAGCAGGGACAGATGAACATGG
CCTTGGCGATACTCTGCGGCACCGCGGGGAGCCTGATCGGCGCCTACGCGAACTATTACGCCGCGCATTACCTGGGGCGC
CCCCTGGTGCTCAAGTACGGAAAGTACGTCTTCATCACCGAGGAGAAGTTCGCCAAGGTGGAGAAATTCTTCCTGAAGCA
CGGCGAGATCTCGACCTTCATAGGTAGGCTCCTGCCGGTGGTCAGGCACCTCATCTCGCTCCCGGCGGGGCTTTCGGGCA
TGAACCACCTGAGGTTCTCCCTCTACACCCTGCTCGGCGCCGGCATCTGGTGCACCGTTCTCACCGTCATCGGCTACGTC
ATCGGCAGCAATCAGGAGCTGATCATGAAGTACTCGCACCAGGCCGTTCTCGGCGTGGTGGTTGTGAGCGCCCTTCTGAT
CGCCGTCTACGTCTGGTGGCAGCGCAGAAACGGCAACTGCGGCGCCGGCGAAGCCCAGCCCAAGTAA

Upstream 100 bases:

>100_bases
AAAGTCCGGCGGCTTCGGAAGAACAGATTAATTTAGTCGTCTTTTTGCCGCGATCTGTAATAGAATGACGCCGCGCAGAA
AGCGAAAAGGAGAGCGAGAA

Downstream 100 bases:

>100_bases
CCCGGGTAAAACAAGGGCGGGTCCAGGACCCGCCCCCATTGGCACATTTTCTGTAAAAGGGGGACAGGCTACTTTTTGTT
TTCAAAAAGTAGCCTGTCCC

Product: membrane protein DedA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MHAVVDWLLQTIGALGYPGIFLLMAMESSIIPIPSELVMPPAGYLAQQGQMNMALAILCGTAGSLIGAYANYYAAHYLGR
PLVLKYGKYVFITEEKFAKVEKFFLKHGEISTFIGRLLPVVRHLISLPAGLSGMNHLRFSLYTLLGAGIWCTVLTVIGYV
IGSNQELIMKYSHQAVLGVVVVSALLIAVYVWWQRRNGNCGAGEAQPK

Sequences:

>Translated_208_residues
MHAVVDWLLQTIGALGYPGIFLLMAMESSIIPIPSELVMPPAGYLAQQGQMNMALAILCGTAGSLIGAYANYYAAHYLGR
PLVLKYGKYVFITEEKFAKVEKFFLKHGEISTFIGRLLPVVRHLISLPAGLSGMNHLRFSLYTLLGAGIWCTVLTVIGYV
IGSNQELIMKYSHQAVLGVVVVSALLIAVYVWWQRRNGNCGAGEAQPK
>Mature_208_residues
MHAVVDWLLQTIGALGYPGIFLLMAMESSIIPIPSELVMPPAGYLAQQGQMNMALAILCGTAGSLIGAYANYYAAHYLGR
PLVLKYGKYVFITEEKFAKVEKFFLKHGEISTFIGRLLPVVRHLISLPAGLSGMNHLRFSLYTLLGAGIWCTVLTVIGYV
IGSNQELIMKYSHQAVLGVVVVSALLIAVYVWWQRRNGNCGAGEAQPK

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1789481, Length=191, Percent_Identity=25.130890052356, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789384, Length=146, Percent_Identity=27.3972602739726, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1788656, Length=174, Percent_Identity=24.1379310344828, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 22733; Mature: 22733

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHAVVDWLLQTIGALGYPGIFLLMAMESSIIPIPSELVMPPAGYLAQQGQMNMALAILCG
CHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHCCCCCHHHHCCCCCHHHHHHHHC
TAGSLIGAYANYYAAHYLGRPLVLKYGKYVFITEEKFAKVEKFFLKHGEISTFIGRLLPV
CHHHHHHHHHHHHHHHHHCCHHEEECCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHH
VRHLISLPAGLSGMNHLRFSLYTLLGAGIWCTVLTVIGYVIGSNQELIMKYSHQAVLGVV
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
VVSALLIAVYVWWQRRNGNCGAGEAQPK
HHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MHAVVDWLLQTIGALGYPGIFLLMAMESSIIPIPSELVMPPAGYLAQQGQMNMALAILCG
CHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHCCCCCHHHHCCCCCHHHHHHHHC
TAGSLIGAYANYYAAHYLGRPLVLKYGKYVFITEEKFAKVEKFFLKHGEISTFIGRLLPV
CHHHHHHHHHHHHHHHHHCCHHEEECCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHH
VRHLISLPAGLSGMNHLRFSLYTLLGAGIWCTVLTVIGYVIGSNQELIMKYSHQAVLGVV
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
VVSALLIAVYVWWQRRNGNCGAGEAQPK
HHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]