| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197116914
Identifier: 197116914
GI number: 197116914
Start: 623938
End: 624429
Strand: Direct
Name: 197116914
Synonym: Gbem_0516
Alternate gene names: NA
Gene position: 623938-624429 (Clockwise)
Preceding gene: 308535170
Following gene: 197116915
Centisome position: 13.52
GC content: 46.75
Gene sequence:
>492_bases ATGGAAATAGGAAAGCACTGGCCTATGATAAAAGCGGTATTGGATAAAGCGCACTCGACTAATCGTCACTGTGCCATTGC AACAGTTAGTGAGGACGGTACTCCCCATGTCACCCCGATAGGCTCGCTCTTTCTCAGGGATGATTGCACAGGTTTTTATA TCGAGAGTTATTGTCAAAAGATGGCGGACAATCTCAAACGCAATAATCGTGTCTGCATCATGGGCATCAACAGTGGGATT GGATACTGGTTGAAGTCGCTTTTTTCCGGACGTTTTCCTTCTCCTCCTGGAGTGAGGCTTTATGGGACCGTCAGCGAACT CAGATTGGGTACTAAAGATGAGATAGAGTATTTCCAAAATCGGGTGCGGCCATTCCGGAAGCTCAAGGGGCATGATCTCC TTTGGAAAAACATGAGACATGTGCGCGAAATACAGTTACAGTCGTTTGAGCCCGTGCATGCGGCAAAGATGACACAGCAT TTGTGGTTATAA
Upstream 100 bases:
>100_bases CAGAAGAACCTCCAGTGAGTTGACGGCACAAAGGCAGTTTCTCCGGCAACAAGCCAGGCGAGTGCGACCATTAAAAGTTG CACCAAGGAGGAATACGATC
Downstream 100 bases:
>100_bases CGGTAGGTACGGACAGGTGCAGCGAACAGACCTGAGCTTGAGTGGTTGCCTCATTATGCATTAAGTGATTTAGCAGTCAG TATTGCGTAATGTCTTATCC
Product: pyridoxamine 5'-phosphate oxidase-like FMN-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 163; Mature: 163
Protein sequence:
>163_residues MEIGKHWPMIKAVLDKAHSTNRHCAIATVSEDGTPHVTPIGSLFLRDDCTGFYIESYCQKMADNLKRNNRVCIMGINSGI GYWLKSLFSGRFPSPPGVRLYGTVSELRLGTKDEIEYFQNRVRPFRKLKGHDLLWKNMRHVREIQLQSFEPVHAAKMTQH LWL
Sequences:
>Translated_163_residues MEIGKHWPMIKAVLDKAHSTNRHCAIATVSEDGTPHVTPIGSLFLRDDCTGFYIESYCQKMADNLKRNNRVCIMGINSGI GYWLKSLFSGRFPSPPGVRLYGTVSELRLGTKDEIEYFQNRVRPFRKLKGHDLLWKNMRHVREIQLQSFEPVHAAKMTQH LWL >Mature_163_residues MEIGKHWPMIKAVLDKAHSTNRHCAIATVSEDGTPHVTPIGSLFLRDDCTGFYIESYCQKMADNLKRNNRVCIMGINSGI GYWLKSLFSGRFPSPPGVRLYGTVSELRLGTKDEIEYFQNRVRPFRKLKGHDLLWKNMRHVREIQLQSFEPVHAAKMTQH LWL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18828; Mature: 18828
Theoretical pI: Translated: 9.90; Mature: 9.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEIGKHWPMIKAVLDKAHSTNRHCAIATVSEDGTPHVTPIGSLFLRDDCTGFYIESYCQK CCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHEEECCCCCHHHHHHHHHH MADNLKRNNRVCIMGINSGIGYWLKSLFSGRFPSPPGVRLYGTVSELRLGTKDEIEYFQN HHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCEEEEEEHHHHCCCCHHHHHHHHH RVRPFRKLKGHDLLWKNMRHVREIQLQSFEPVHAAKMTQHLWL HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC >Mature Secondary Structure MEIGKHWPMIKAVLDKAHSTNRHCAIATVSEDGTPHVTPIGSLFLRDDCTGFYIESYCQK CCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHEEECCCCCHHHHHHHHHH MADNLKRNNRVCIMGINSGIGYWLKSLFSGRFPSPPGVRLYGTVSELRLGTKDEIEYFQN HHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCEEEEEEHHHHCCCCHHHHHHHHH RVRPFRKLKGHDLLWKNMRHVREIQLQSFEPVHAAKMTQHLWL HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA