| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is murF [H]
Identifier: 197116885
GI number: 197116885
Start: 587817
End: 589226
Strand: Direct
Name: murF [H]
Synonym: Gbem_0487
Alternate gene names: 197116885
Gene position: 587817-589226 (Clockwise)
Preceding gene: 197116884
Following gene: 197116886
Centisome position: 12.74
GC content: 65.39
Gene sequence:
>1410_bases ATGGCGATGTTCACGCTTAACGAAATAGCCGAGGCAACCGGCGGCAGGGTGATCGGGGAGGCGGCAGGCGAGGCCTCCGC GGTGAGCACCGACTCGCGCCAGGTAGCCCCGGGAGAGCTTTTCGTGGCACTGAGGGGCGAGCGCTTCGACGGCCACGACT TCATAATTCCGGCGGTCTCTAAAGGGGTAACCATCTTCCTGGCCGAGGAGAGCTGGGCGGCAAAACACGAACTCCCGAAG GGGGCCGGCGCCGTGCTGGTGCCGGACACGCTGCGCGCCCTGGGGGATCTGGCCGCCTACCACCGCCGCCGCTTCAACCT GAAGACGGTCTGCGTCACCGGCAGCAACGGCAAGACCACGACCAAGGAGATGCTGGCGCGGATACTGGCCCAGACTGGGC CCGGGCTCAAGACCGAGGGGAACCTCAACAACCTGATCGGTTTGCCGCTCACCATCTTCAGGCTCACCGGCCGCGAGCGC TGGGCCGTCTTCGAGATCGGGATGAGCGAGTTCGGCGAGATCGACCGCCTGGCGGAGATAGCTGAGCCCCAGGTAGGCAT CATCACCAACGCCTTTCCGGCGCACCTGGAGACCCTGGGGAGCGTGGAAGGGGTGGCGCGGGCCAAGGGAGAGCTTTTCC TGCGCCTTAAGCCAGGTTCCGTCGCCGTCTACAACGTGGACGACCCGCTGGTCTCCACCTGCCCGACCCACCTGAACGTG ACCCGGCTCACCTTTGGCCTCAGGGGGGCCGAGGTCTCCTCCGCCTCCATCCAGAGCCTCGGCAAGAGGGGGGAGAGCTT CACCCTCAGGCTTCCGGACGGCGAACAGCAGGTGACCCTGTCGGCCTACGGCAGGCACAACATCTACAACGCGCTCGCCG CAGCCGCTGCAGCGCACGCGCTCGGCGTACCGGGCGACCTGATCCGCCAGGGGCTGGAGGAGTTCTCCCCCTACGACAAG CGCTTCCAGCTGGAGGAAGTGGCGGGGGTGACCCTGATCGACGACAGCTACAACGCGAACCCGGCCTCCATGGCGGCGGC GCTCACCACCTTGAAGGAGCTTCAAGGGGAGGGGCGTTTGGTAGCGGTTTTAGGCGACATGCTGGAGCTTGGGCTTGGCA CCGAAGAGGCGCACCGCGAACTGGGGAAACTTGCCGCAGGGAACGTCGACCGGCTCTACCTTTTGGGGAAACTGGTCGAG GAAACCGCCAAGGGGGCGCTGGAAGCGGGGCTTCCCGCAGCCGACCTGGTGCTGGGTCGGGACCATGACCAGCTGGCCCA GGAGCTTCTCTCCTTCGTACAGCCGGGGGACTGCATTCTTTTCAAGGGATCTAGAGGCATGAAAATGGACAAGGTGGCGC AATTGGTACGGCAGGGACTGGCATCCGCCGCAAAAGGGGGGAATGACTGA
Upstream 100 bases:
>100_bases TTTTCCGCGTTTTTGCGGCACATTACGTGGTTTCGGTCCTGGACCGGGGCAAGTAAACAGGGCGCGTCGCGCGCCGGGAA CAAAGGAAACCTAACTGAAA
Downstream 100 bases:
>100_bases TGCTTTACCATCTCCTTTACCCGCTCGCCTCTGATTACAAGCTCTTCAACGTATTCAAATACCTGACCTTCCGCTCCATC TACGCCATGATCACGGCCCT
Product: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase
Products: NA
Alternate protein names: D-alanyl-D-alanine-adding enzyme; UDP-MurNAc-pentapeptide synthetase [H]
Number of amino acids: Translated: 469; Mature: 468
Protein sequence:
>469_residues MAMFTLNEIAEATGGRVIGEAAGEASAVSTDSRQVAPGELFVALRGERFDGHDFIIPAVSKGVTIFLAEESWAAKHELPK GAGAVLVPDTLRALGDLAAYHRRRFNLKTVCVTGSNGKTTTKEMLARILAQTGPGLKTEGNLNNLIGLPLTIFRLTGRER WAVFEIGMSEFGEIDRLAEIAEPQVGIITNAFPAHLETLGSVEGVARAKGELFLRLKPGSVAVYNVDDPLVSTCPTHLNV TRLTFGLRGAEVSSASIQSLGKRGESFTLRLPDGEQQVTLSAYGRHNIYNALAAAAAAHALGVPGDLIRQGLEEFSPYDK RFQLEEVAGVTLIDDSYNANPASMAAALTTLKELQGEGRLVAVLGDMLELGLGTEEAHRELGKLAAGNVDRLYLLGKLVE ETAKGALEAGLPAADLVLGRDHDQLAQELLSFVQPGDCILFKGSRGMKMDKVAQLVRQGLASAAKGGND
Sequences:
>Translated_469_residues MAMFTLNEIAEATGGRVIGEAAGEASAVSTDSRQVAPGELFVALRGERFDGHDFIIPAVSKGVTIFLAEESWAAKHELPK GAGAVLVPDTLRALGDLAAYHRRRFNLKTVCVTGSNGKTTTKEMLARILAQTGPGLKTEGNLNNLIGLPLTIFRLTGRER WAVFEIGMSEFGEIDRLAEIAEPQVGIITNAFPAHLETLGSVEGVARAKGELFLRLKPGSVAVYNVDDPLVSTCPTHLNV TRLTFGLRGAEVSSASIQSLGKRGESFTLRLPDGEQQVTLSAYGRHNIYNALAAAAAAHALGVPGDLIRQGLEEFSPYDK RFQLEEVAGVTLIDDSYNANPASMAAALTTLKELQGEGRLVAVLGDMLELGLGTEEAHRELGKLAAGNVDRLYLLGKLVE ETAKGALEAGLPAADLVLGRDHDQLAQELLSFVQPGDCILFKGSRGMKMDKVAQLVRQGLASAAKGGND >Mature_468_residues AMFTLNEIAEATGGRVIGEAAGEASAVSTDSRQVAPGELFVALRGERFDGHDFIIPAVSKGVTIFLAEESWAAKHELPKG AGAVLVPDTLRALGDLAAYHRRRFNLKTVCVTGSNGKTTTKEMLARILAQTGPGLKTEGNLNNLIGLPLTIFRLTGRERW AVFEIGMSEFGEIDRLAEIAEPQVGIITNAFPAHLETLGSVEGVARAKGELFLRLKPGSVAVYNVDDPLVSTCPTHLNVT RLTFGLRGAEVSSASIQSLGKRGESFTLRLPDGEQQVTLSAYGRHNIYNALAAAAAAHALGVPGDLIRQGLEEFSPYDKR FQLEEVAGVTLIDDSYNANPASMAAALTTLKELQGEGRLVAVLGDMLELGLGTEEAHRELGKLAAGNVDRLYLLGKLVEE TAKGALEAGLPAADLVLGRDHDQLAQELLSFVQPGDCILFKGSRGMKMDKVAQLVRQGLASAAKGGND
Specific function: Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein [H]
COG id: COG0770
COG function: function code M; UDP-N-acetylmuramyl pentapeptide synthase
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MurCDEF family [H]
Homologues:
Organism=Escherichia coli, GI1786274, Length=465, Percent_Identity=37.6344086021505, Blast_Score=226, Evalue=3e-60,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004101 - InterPro: IPR013221 - InterPro: IPR000713 - InterPro: IPR005863 [H]
Pfam domain/function: PF01225 Mur_ligase; PF02875 Mur_ligase_C; PF08245 Mur_ligase_M [H]
EC number: =6.3.2.10 [H]
Molecular weight: Translated: 49819; Mature: 49687
Theoretical pI: Translated: 5.36; Mature: 5.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAMFTLNEIAEATGGRVIGEAAGEASAVSTDSRQVAPGELFVALRGERFDGHDFIIPAVS CCEEEHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECC KGVTIFLAEESWAAKHELPKGAGAVLVPDTLRALGDLAAYHRRRFNLKTVCVTGSNGKTT CCEEEEEECCCCHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCH TKEMLARILAQTGPGLKTEGNLNNLIGLPLTIFRLTGRERWAVFEIGMSEFGEIDRLAEI HHHHHHHHHHHCCCCCCCCCCCCCHHCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHH AEPQVGIITNAFPAHLETLGSVEGVARAKGELFLRLKPGSVAVYNVDDPLVSTCPTHLNV CCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCHHHHCCCCCEE TRLTFGLRGAEVSSASIQSLGKRGESFTLRLPDGEQQVTLSAYGRHNIYNALAAAAAAHA EEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHH LGVPGDLIRQGLEEFSPYDKRFQLEEVAGVTLIDDSYNANPASMAAALTTLKELQGEGRL CCCCHHHHHHHHHHCCCCCCCEEHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCE VAVLGDMLELGLGTEEAHRELGKLAAGNVDRLYLLGKLVEETAKGALEAGLPAADLVLGR EHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHEECC DHDQLAQELLSFVQPGDCILFKGSRGMKMDKVAQLVRQGLASAAKGGND CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure AMFTLNEIAEATGGRVIGEAAGEASAVSTDSRQVAPGELFVALRGERFDGHDFIIPAVS CEEEHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECC KGVTIFLAEESWAAKHELPKGAGAVLVPDTLRALGDLAAYHRRRFNLKTVCVTGSNGKTT CCEEEEEECCCCHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCH TKEMLARILAQTGPGLKTEGNLNNLIGLPLTIFRLTGRERWAVFEIGMSEFGEIDRLAEI HHHHHHHHHHHCCCCCCCCCCCCCHHCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHH AEPQVGIITNAFPAHLETLGSVEGVARAKGELFLRLKPGSVAVYNVDDPLVSTCPTHLNV CCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCHHHHCCCCCEE TRLTFGLRGAEVSSASIQSLGKRGESFTLRLPDGEQQVTLSAYGRHNIYNALAAAAAAHA EEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHH LGVPGDLIRQGLEEFSPYDKRFQLEEVAGVTLIDDSYNANPASMAAALTTLKELQGEGRL CCCCHHHHHHHHHHCCCCCCCEEHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCE VAVLGDMLELGLGTEEAHRELGKLAAGNVDRLYLLGKLVEETAKGALEAGLPAADLVLGR EHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHEECC DHDQLAQELLSFVQPGDCILFKGSRGMKMDKVAQLVRQGLASAAKGGND CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12522265 [H]