Definition Geobacter bemidjiensis Bem chromosome, complete genome.
Accession NC_011146
Length 4,615,150

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The map label for this gene is ydjP [H]

Identifier: 197116840

GI number: 197116840

Start: 524787

End: 525767

Strand: Direct

Name: ydjP [H]

Synonym: Gbem_0442

Alternate gene names: 197116840

Gene position: 524787-525767 (Clockwise)

Preceding gene: 197116839

Following gene: 197116841

Centisome position: 11.37

GC content: 50.56

Gene sequence:

>981_bases
ATGCGAAACAAAACCTTCTTAGCCATTTGCGCCATATCTTTCATCTTGTCCGTTAGCGACGCCATAGCAGCGCCGGCCCT
GGCCGTTCTCGGCAGGGACTATGAGTTCCCCAATAAGATCAGTGGGCTACCCGCGAAACTCTCCGACTTCAAAGATCTGG
AAATCAAATTTTTCAATACGAGCGATGGGGTGAGGCTTAGCTATTGGGAAGCCGGTAAAGGCAAGCCCCTCATCTTCGTT
CCGGCGTGGTCCGCAAATGGCGCAGAATATGTAAATGTGCTGTTTTTGCTCAGCAAACAGTACCACGTCTACGTTCTCGA
TCCGCGCAATCAAGGGCTTTCTCAGAATATTGATTCGGGTATGAGAATCAGCAGACTATCAATGGATCTAAAGGAATTCA
CCGATCACATCGGGGTGAAGTCTGCCGACTACTGTGGATGGTCGATGGGAGCCTCAGTCCTGTGGAGCTACATCGATCTG
TTCGGTATAAATGGTGTCCGCAAGGTGATTTTCGTGGACGAACCGCCGTCTATTCTCACACGGCCAGGCTGGACGGAACA
AGAACGCCTGAATGCGGCCGCAATGGCTGATTCTCCGCAGCAAGTACTAAACGCCCTCACTTCCGGCGCACCCCATCCTC
TTGTCGAACGTTTTAATGCGATGGACTCGCCTTATTACGAAAACTCCAAGAGCTTTGCCCGGCTCTTTATCAAGAGCGAT
ATGAAATACATGAGCCTTATCATGTATGACCATGCCAGCAATGACTGGCGCGATGTAATAAGCAAGAAGATCAAAGTGCC
AACGGCAATTTTCACCGGCGAATACAGCAGCTATAACCTGCCCAGCCAGCGCTGGATGGCTTCGGTCATCCCCAACGCTC
GGTTGTACGTCTACACAAAGGAAGAACAAGGGGATCACTTCCTCATGTTCAAGAACCCGTTCAAATTCACGCAGGACCTG
CGTGAATTTCTGGAACGCTGA

Upstream 100 bases:

>100_bases
GCGAATAGCCTTGTGCAGTTTACTCAGAACGATGGCATTCCTGTTGAGGGTAAGCCTTCCTGGCTGAACTAGAAAGTTGA
GCAAATGAGGAGTCTATTTC

Downstream 100 bases:

>100_bases
TCCGAAGATAGTCATTCGTCGCCTGAGCACACTAGCAGGCAGGCAAACCAACCACATTTCCCGATTCAAGGAGGACGTCA
TGCCCGTTGTACGTGTTACC

Product: alpha/beta hydrolase superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MRNKTFLAICAISFILSVSDAIAAPALAVLGRDYEFPNKISGLPAKLSDFKDLEIKFFNTSDGVRLSYWEAGKGKPLIFV
PAWSANGAEYVNVLFLLSKQYHVYVLDPRNQGLSQNIDSGMRISRLSMDLKEFTDHIGVKSADYCGWSMGASVLWSYIDL
FGINGVRKVIFVDEPPSILTRPGWTEQERLNAAAMADSPQQVLNALTSGAPHPLVERFNAMDSPYYENSKSFARLFIKSD
MKYMSLIMYDHASNDWRDVISKKIKVPTAIFTGEYSSYNLPSQRWMASVIPNARLYVYTKEEQGDHFLMFKNPFKFTQDL
REFLER

Sequences:

>Translated_326_residues
MRNKTFLAICAISFILSVSDAIAAPALAVLGRDYEFPNKISGLPAKLSDFKDLEIKFFNTSDGVRLSYWEAGKGKPLIFV
PAWSANGAEYVNVLFLLSKQYHVYVLDPRNQGLSQNIDSGMRISRLSMDLKEFTDHIGVKSADYCGWSMGASVLWSYIDL
FGINGVRKVIFVDEPPSILTRPGWTEQERLNAAAMADSPQQVLNALTSGAPHPLVERFNAMDSPYYENSKSFARLFIKSD
MKYMSLIMYDHASNDWRDVISKKIKVPTAIFTGEYSSYNLPSQRWMASVIPNARLYVYTKEEQGDHFLMFKNPFKFTQDL
REFLER
>Mature_326_residues
MRNKTFLAICAISFILSVSDAIAAPALAVLGRDYEFPNKISGLPAKLSDFKDLEIKFFNTSDGVRLSYWEAGKGKPLIFV
PAWSANGAEYVNVLFLLSKQYHVYVLDPRNQGLSQNIDSGMRISRLSMDLKEFTDHIGVKSADYCGWSMGASVLWSYIDL
FGINGVRKVIFVDEPPSILTRPGWTEQERLNAAAMADSPQQVLNALTSGAPHPLVERFNAMDSPYYENSKSFARLFIKSD
MKYMSLIMYDHASNDWRDVISKKIKVPTAIFTGEYSSYNLPSQRWMASVIPNARLYVYTKEEQGDHFLMFKNPFKFTQDL
REFLER

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: NA

Molecular weight: Translated: 37049; Mature: 37049

Theoretical pI: Translated: 8.16; Mature: 8.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNKTFLAICAISFILSVSDAIAAPALAVLGRDYEFPNKISGLPAKLSDFKDLEIKFFNT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCEEEEEEEC
SDGVRLSYWEAGKGKPLIFVPAWSANGAEYVNVLFLLSKQYHVYVLDPRNQGLSQNIDSG
CCCCEEEEEECCCCCEEEEEECCCCCCHHHHHHHEEECCCCEEEEECCCCCCCCCCCCCC
MRISRLSMDLKEFTDHIGVKSADYCGWSMGASVLWSYIDLFGINGVRKVIFVDEPPSILT
CEEHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHCC
RPGWTEQERLNAAAMADSPQQVLNALTSGAPHPLVERFNAMDSPYYENSKSFARLFIKSD
CCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHC
MKYMSLIMYDHASNDWRDVISKKIKVPTAIFTGEYSSYNLPSQRWMASVIPNARLYVYTK
HHHHHEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHCCCCEEEEEEE
EEQGDHFLMFKNPFKFTQDLREFLER
CCCCCEEEEECCCHHHHHHHHHHHHC
>Mature Secondary Structure
MRNKTFLAICAISFILSVSDAIAAPALAVLGRDYEFPNKISGLPAKLSDFKDLEIKFFNT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCEEEEEEEC
SDGVRLSYWEAGKGKPLIFVPAWSANGAEYVNVLFLLSKQYHVYVLDPRNQGLSQNIDSG
CCCCEEEEEECCCCCEEEEEECCCCCCHHHHHHHEEECCCCEEEEECCCCCCCCCCCCCC
MRISRLSMDLKEFTDHIGVKSADYCGWSMGASVLWSYIDLFGINGVRKVIFVDEPPSILT
CEEHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHCC
RPGWTEQERLNAAAMADSPQQVLNALTSGAPHPLVERFNAMDSPYYENSKSFARLFIKSD
CCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHC
MKYMSLIMYDHASNDWRDVISKKIKVPTAIFTGEYSSYNLPSQRWMASVIPNARLYVYTK
HHHHHEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHCCCCEEEEEEE
EEQGDHFLMFKNPFKFTQDLREFLER
CCCCCEEEEECCCHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9455482; 9384377 [H]