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The map label for this gene is ymdB [C]

Identifier: 197116755

GI number: 197116755

Start: 435603

End: 436136

Strand: Reverse

Name: ymdB [C]

Synonym: Gbem_0355

Alternate gene names: 197116755

Gene position: 436136-435603 (Counterclockwise)

Preceding gene: 197116756

Following gene: 197116754

Centisome position: 9.45

GC content: 65.36

Gene sequence:

>534_bases
ATGAGCGCTACGAAGCTCAGCGAAAGGGTGGAGATCATCCGCGGGGACATAACGAGGATAGCCGTCGACGCCATCGTCAA
CGCCGCCAACGGCACACTTCTGGGCGGAGGAGGCGTGGACGGCGCCATCCACCGCGCCGCAGGCCCCGAGCTTCTGGCCG
AGTGCAGAACATTGTCGGGGTGCGCCACCGGCGAGGCCAAGATCACCGCCGGCTACCGGTTGCCGGCGCGCCACGTGATA
CACACGGTCGGCCCGGTCTGGCACGGCGGGAGCCGCGGCGAGCCTGAACTCCTTCGCTCCTGCTACCGCAACGCCTGCCG
CCTGGCCCACGAAAATGGGCTCTCCAGCATCGCCTTCCCGGCCATCAGCGCCGGGGTCTACGGCTACCCGATGCGCCTCG
CCTGCAGGATCGCGCTGGAAGAGGCAAAGGCCGCACTGGAGGGCTATCCGGACCTGAAAAAGGTGGTCTTCGTCCCCTTT
TCGCCCGAGGCGGAACAGATTTATCAAGAGCTTTTGCAGGAGGTTTTTTCGTGA

Upstream 100 bases:

>100_bases
TTCATCGAGACGCCCAAGGGGGACGCCGACGAGATGGATGTGGTGAACCTGAAACTCTTGAGGAGCCTGGTCGAAGGGTG
ACCGGGCGGGGGGTGCCTTC

Downstream 100 bases:

>100_bases
AGGCAGTAATCCAGCGGGTGAAAGAAGCGAAGGTCTCGGTTGAGGGGAGGGTGGTCGGCGAGATCGGGAAGGGCGTCCTG
GTGCTCTTGGGCGTCGAGAT

Product: ribonuclease III-modulating protein YmdB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 176

Protein sequence:

>177_residues
MSATKLSERVEIIRGDITRIAVDAIVNAANGTLLGGGGVDGAIHRAAGPELLAECRTLSGCATGEAKITAGYRLPARHVI
HTVGPVWHGGSRGEPELLRSCYRNACRLAHENGLSSIAFPAISAGVYGYPMRLACRIALEEAKAALEGYPDLKKVVFVPF
SPEAEQIYQELLQEVFS

Sequences:

>Translated_177_residues
MSATKLSERVEIIRGDITRIAVDAIVNAANGTLLGGGGVDGAIHRAAGPELLAECRTLSGCATGEAKITAGYRLPARHVI
HTVGPVWHGGSRGEPELLRSCYRNACRLAHENGLSSIAFPAISAGVYGYPMRLACRIALEEAKAALEGYPDLKKVVFVPF
SPEAEQIYQELLQEVFS
>Mature_176_residues
SATKLSERVEIIRGDITRIAVDAIVNAANGTLLGGGGVDGAIHRAAGPELLAECRTLSGCATGEAKITAGYRLPARHVIH
TVGPVWHGGSRGEPELLRSCYRNACRLAHENGLSSIAFPAISAGVYGYPMRLACRIALEEAKAALEGYPDLKKVVFVPFS
PEAEQIYQELLQEVFS

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=174, Percent_Identity=52.8735632183908, Blast_Score=181, Evalue=3e-46,
Organism=Homo sapiens, GI13569840, Length=174, Percent_Identity=51.7241379310345, Blast_Score=174, Evalue=4e-44,
Organism=Homo sapiens, GI207450721, Length=170, Percent_Identity=40.5882352941176, Blast_Score=116, Evalue=1e-26,
Organism=Homo sapiens, GI8923143, Length=170, Percent_Identity=40.5882352941176, Blast_Score=115, Evalue=2e-26,
Organism=Homo sapiens, GI154813199, Length=187, Percent_Identity=35.2941176470588, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI20336746, Length=177, Percent_Identity=33.8983050847458, Blast_Score=87, Evalue=6e-18,
Organism=Homo sapiens, GI226371718, Length=167, Percent_Identity=32.9341317365269, Blast_Score=86, Evalue=1e-17,
Organism=Homo sapiens, GI226371716, Length=167, Percent_Identity=32.9341317365269, Blast_Score=86, Evalue=1e-17,
Organism=Homo sapiens, GI226371714, Length=167, Percent_Identity=32.9341317365269, Blast_Score=86, Evalue=1e-17,
Organism=Homo sapiens, GI226371712, Length=167, Percent_Identity=32.9341317365269, Blast_Score=86, Evalue=1e-17,
Organism=Homo sapiens, GI226371710, Length=167, Percent_Identity=32.9341317365269, Blast_Score=86, Evalue=1e-17,
Organism=Homo sapiens, GI226371706, Length=167, Percent_Identity=32.9341317365269, Blast_Score=86, Evalue=1e-17,
Organism=Homo sapiens, GI93141018, Length=180, Percent_Identity=32.2222222222222, Blast_Score=78, Evalue=4e-15,
Organism=Homo sapiens, GI93141020, Length=180, Percent_Identity=32.2222222222222, Blast_Score=78, Evalue=5e-15,
Organism=Homo sapiens, GI4758496, Length=180, Percent_Identity=32.2222222222222, Blast_Score=78, Evalue=5e-15,
Organism=Escherichia coli, GI1787283, Length=173, Percent_Identity=49.1329479768786, Blast_Score=165, Evalue=1e-42,
Organism=Caenorhabditis elegans, GI17538214, Length=167, Percent_Identity=45.5089820359281, Blast_Score=137, Evalue=2e-33,
Organism=Drosophila melanogaster, GI24586353, Length=144, Percent_Identity=36.8055555555556, Blast_Score=85, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 18859; Mature: 18728

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSATKLSERVEIIRGDITRIAVDAIVNAANGTLLGGGGVDGAIHRAAGPELLAECRTLSG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHCCCHHHHHHHHHHCC
CATGEAKITAGYRLPARHVIHTVGPVWHGGSRGEPELLRSCYRNACRLAHENGLSSIAFP
CCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHH
AISAGVYGYPMRLACRIALEEAKAALEGYPDLKKVVFVPFSPEAEQIYQELLQEVFS
HHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC
>Mature Secondary Structure 
SATKLSERVEIIRGDITRIAVDAIVNAANGTLLGGGGVDGAIHRAAGPELLAECRTLSG
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHCCCHHHHHHHHHHCC
CATGEAKITAGYRLPARHVIHTVGPVWHGGSRGEPELLRSCYRNACRLAHENGLSSIAFP
CCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHH
AISAGVYGYPMRLACRIALEEAKAALEGYPDLKKVVFVPFSPEAEQIYQELLQEVFS
HHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]