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The map label for this gene is ydiP [C]

Identifier: 197104474

GI number: 197104474

Start: 1118258

End: 1119232

Strand: Direct

Name: ydiP [C]

Synonym: PHZ_c1008

Alternate gene names: 197104474

Gene position: 1118258-1119232 (Clockwise)

Preceding gene: 197104473

Following gene: 197104477

Centisome position: 27.98

GC content: 74.56

Gene sequence:

>975_bases
ATGAAGTCGCCGGACTGGCGCATCGTGGATCAGACGGGCGAGGTCCGCCTGGATCCCAACGGCGTCACGGTCATGTCCGG
GCCCAACTGGACCGGCCGCTACGAGCGGGTCACGTTCGGCGCGGGCTTCCACATGAACCTGGGCTGCATCGAGACCCGGG
GCCCCACCGAGCACCGCGTGGCCGGCGAAAGCGACGCGCCGCCGTCCGTCTCGGTCTGGATGCCGATCTCGGGCCAGGCG
ACGCTGTCCACGGCCGACCATCCGGACTTCCGGTTCAGGCCGTGGCGCGCCGCCCTGCTGGTCACCAAGGATCGCGCCGG
GGTCTTCCGCTTTCCCGGGCCGCAGGCGTTCCGCTTCTTCAGCGTCGCGGTCTCGCCCGAACTGCTGACCTCCCTGCTCG
ACGGCGAGGTCCCCGAGGGCCTGCGCCCGCTCGTGGAGAGCCGTGCGCGCGAGACGGTGATCCGGGAGCGGCCGATCAAG
GCGGCCACCCGCGCCCTGGTCGGCGAGCTCGGCGCGCCCGGGGCTGGCGGGTCGCTCCAGCGCCTGCATCGGGAAGCCGT
GGCCCTGCGTCTGCTCACCGAGGTGCTGGGCGCGGAGATGACGGCCTTCGACGCCTCGACGCTCACCTCCGCCGAGACCG
CGGCGGTTCACGGCGCGCGCGAGGCGCTGGTGCGGGACCTGCGCGACCCGCCGTCGGCCGCCGAGCTCGCCAAGGCCGCG
CGGATGGGACTGCGCCGGTTCCTCAACGCCTTCGAGGCCCTCCACGGGGCCAGCCCCGACCGCGCGCTGCGCCTGGCGCG
GCTCTCCGAGGCCCGCCGCCTCGTGGAGACCGGAGACCTGCCGATGAAGGAGATCGCGTGGCGGGTGGGCTACGCCCACG
CCAGCAACTTCGTGTCCGCCTTCGCGGCCGAGTACGGCGCGCCGCCGCGCCGCTTTCGCCGGACCGTCGCGCAGCCCGGC
GCCGGGCGGCCCTAG

Upstream 100 bases:

>100_bases
GGTACCAGCCGGCCGCGCCCCCTCGCCACGGACCCGCGTTATTGGATCGCGTCGTTTCTTATGAGATGCTGCCGGCAGGG
TTGTGGGGCGTGGTTTTCCG

Downstream 100 bases:

>100_bases
CCGCCCGGGTGCAGCCCCGGGGCTTCCTGGCCCGTGCGGGCGACATATTCGGTGTAGCCGCCGCCGTACTGATGGACGCC
CTCGGGCGTCAGCTCCAGCA

Product: transcriptional regulator, AraC family

Products: NA

Alternate protein names: Transcriptional Regulator; AraC Family Transcriptional Regulator

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MKSPDWRIVDQTGEVRLDPNGVTVMSGPNWTGRYERVTFGAGFHMNLGCIETRGPTEHRVAGESDAPPSVSVWMPISGQA
TLSTADHPDFRFRPWRAALLVTKDRAGVFRFPGPQAFRFFSVAVSPELLTSLLDGEVPEGLRPLVESRARETVIRERPIK
AATRALVGELGAPGAGGSLQRLHREAVALRLLTEVLGAEMTAFDASTLTSAETAAVHGAREALVRDLRDPPSAAELAKAA
RMGLRRFLNAFEALHGASPDRALRLARLSEARRLVETGDLPMKEIAWRVGYAHASNFVSAFAAEYGAPPRRFRRTVAQPG
AGRP

Sequences:

>Translated_324_residues
MKSPDWRIVDQTGEVRLDPNGVTVMSGPNWTGRYERVTFGAGFHMNLGCIETRGPTEHRVAGESDAPPSVSVWMPISGQA
TLSTADHPDFRFRPWRAALLVTKDRAGVFRFPGPQAFRFFSVAVSPELLTSLLDGEVPEGLRPLVESRARETVIRERPIK
AATRALVGELGAPGAGGSLQRLHREAVALRLLTEVLGAEMTAFDASTLTSAETAAVHGAREALVRDLRDPPSAAELAKAA
RMGLRRFLNAFEALHGASPDRALRLARLSEARRLVETGDLPMKEIAWRVGYAHASNFVSAFAAEYGAPPRRFRRTVAQPG
AGRP
>Mature_324_residues
MKSPDWRIVDQTGEVRLDPNGVTVMSGPNWTGRYERVTFGAGFHMNLGCIETRGPTEHRVAGESDAPPSVSVWMPISGQA
TLSTADHPDFRFRPWRAALLVTKDRAGVFRFPGPQAFRFFSVAVSPELLTSLLDGEVPEGLRPLVESRARETVIRERPIK
AATRALVGELGAPGAGGSLQRLHREAVALRLLTEVLGAEMTAFDASTLTSAETAAVHGAREALVRDLRDPPSAAELAKAA
RMGLRRFLNAFEALHGASPDRALRLARLSEARRLVETGDLPMKEIAWRVGYAHASNFVSAFAAEYGAPPRRFRRTVAQPG
AGRP

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35221; Mature: 35221

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSPDWRIVDQTGEVRLDPNGVTVMSGPNWTGRYERVTFGAGFHMNLGCIETRGPTEHRV
CCCCCCEEEECCCCEEECCCCEEEECCCCCCCCEEEEEECCCEEECCCEEECCCCCHHCC
AGESDAPPSVSVWMPISGQATLSTADHPDFRFRPWRAALLVTKDRAGVFRFPGPQAFRFF
CCCCCCCCCEEEEEECCCCEEECCCCCCCCCCCCEEEEEEEEECCCCEEECCCCHHEEHE
SVAVSPELLTSLLDGEVPEGLRPLVESRARETVIRERPIKAATRALVGELGAPGAGGSLQ
EEECCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHH
RLHREAVALRLLTEVLGAEMTAFDASTLTSAETAAVHGAREALVRDLRDPPSAAELAKAA
HHHHHHHHHHHHHHHHCCHHHHCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
RMGLRRFLNAFEALHGASPDRALRLARLSEARRLVETGDLPMKEIAWRVGYAHASNFVSA
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
FAAEYGAPPRRFRRTVAQPGAGRP
HHHHHCCCHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKSPDWRIVDQTGEVRLDPNGVTVMSGPNWTGRYERVTFGAGFHMNLGCIETRGPTEHRV
CCCCCCEEEECCCCEEECCCCEEEECCCCCCCCEEEEEECCCEEECCCEEECCCCCHHCC
AGESDAPPSVSVWMPISGQATLSTADHPDFRFRPWRAALLVTKDRAGVFRFPGPQAFRFF
CCCCCCCCCEEEEEECCCCEEECCCCCCCCCCCCEEEEEEEEECCCCEEECCCCHHEEHE
SVAVSPELLTSLLDGEVPEGLRPLVESRARETVIRERPIKAATRALVGELGAPGAGGSLQ
EEECCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHH
RLHREAVALRLLTEVLGAEMTAFDASTLTSAETAAVHGAREALVRDLRDPPSAAELAKAA
HHHHHHHHHHHHHHHHCCHHHHCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
RMGLRRFLNAFEALHGASPDRALRLARLSEARRLVETGDLPMKEIAWRVGYAHASNFVSA
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
FAAEYGAPPRRFRRTVAQPGAGRP
HHHHHCCCHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA