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The map label for this gene is sodC [H]

Identifier: 197104393

GI number: 197104393

Start: 1018772

End: 1019272

Strand: Reverse

Name: sodC [H]

Synonym: PHZ_c0927

Alternate gene names: 197104393

Gene position: 1019272-1018772 (Counterclockwise)

Preceding gene: 197104404

Following gene: 197104389

Centisome position: 25.51

GC content: 72.65

Gene sequence:

>501_bases
ATGCGCCACATGATCGCCCTCGCCGCCACGGCCGCCCTCGCTGCTTCGGCCGCCTCGGCGCAGACCGATTCGGTCACCAC
CGAGCTGAAGAACAGCGCCGGGCAGGCGATGGGCTCCGTCACCCTCACCCAGGGCCCAAAGGGCGTGGTCATGCGGGTGG
AGGCCAAGGGCCTGACCCCCGGCTGGCACGGGCTGCACTTCCACGAGAAGGCGGACTGCTCGAAGTCGGACTTCACCTCG
GCCGGCGGCCACACGCACGGCGGCGGCGAGCGGGTCCACGGCCTGCTGAACCCCGAGGCCAACGAGACCGGCGACCTGCC
GAACCTCTACGCCGGCGCGGACGGCGCGGGCGCGGCGGAGGTCTACACGACGCTGACCAGCCTGAAGGCCCTGCGCGACG
CGGACGGCTCGGCGGTGGTGATCCACGCCAACGCCGACGACCACAAGACCCAGCCGATCGGCGGCGCCGGCGCGCGCGTG
GCCTGCGCGGTGATCAAGTAA

Upstream 100 bases:

>100_bases
CGATGGCGGGGTCCATGGCCAAGCCCTAGCACGGGCCAAGGCTCCCCGCCGCCATCCTCGCGCGTTAAGACTGCACCCTC
GTCGTCAAAGGAGTATCCGC

Downstream 100 bases:

>100_bases
GCGCAGCGACTCATCCCCGTCACGGCGGGAAATCCATCGCGATCCGCGGGAGCGGGCCCCCGGCTTCCGCCGGGCGGCCC
CGCCCCGCGCTCAGATCGGC

Product: Cu/Zn superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MRHMIALAATAALAASAASAQTDSVTTELKNSAGQAMGSVTLTQGPKGVVMRVEAKGLTPGWHGLHFHEKADCSKSDFTS
AGGHTHGGGERVHGLLNPEANETGDLPNLYAGADGAGAAEVYTTLTSLKALRDADGSAVVIHANADDHKTQPIGGAGARV
ACAVIK

Sequences:

>Translated_166_residues
MRHMIALAATAALAASAASAQTDSVTTELKNSAGQAMGSVTLTQGPKGVVMRVEAKGLTPGWHGLHFHEKADCSKSDFTS
AGGHTHGGGERVHGLLNPEANETGDLPNLYAGADGAGAAEVYTTLTSLKALRDADGSAVVIHANADDHKTQPIGGAGARV
ACAVIK
>Mature_166_residues
MRHMIALAATAALAASAASAQTDSVTTELKNSAGQAMGSVTLTQGPKGVVMRVEAKGLTPGWHGLHFHEKADCSKSDFTS
AGGHTHGGGERVHGLLNPEANETGDLPNLYAGADGAGAAEVYTTLTSLKALRDADGSAVVIHANADDHKTQPIGGAGARV
ACAVIK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems. May function against extracytoplasmic toxic oxygen species [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Escherichia coli, GI1787934, Length=175, Percent_Identity=37.1428571428571, Blast_Score=82, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71981876, Length=139, Percent_Identity=37.410071942446, Blast_Score=74, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI71981879, Length=139, Percent_Identity=37.410071942446, Blast_Score=73, Evalue=6e-14,
Organism=Drosophila melanogaster, GI85725006, Length=183, Percent_Identity=31.6939890710383, Blast_Score=64, Evalue=5e-11,
Organism=Drosophila melanogaster, GI45551081, Length=180, Percent_Identity=32.2222222222222, Blast_Score=63, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24652737, Length=180, Percent_Identity=32.2222222222222, Blast_Score=63, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 16736; Mature: 16736

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHMIALAATAALAASAASAQTDSVTTELKNSAGQAMGSVTLTQGPKGVVMRVEAKGLTP
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCEEEEECCCCCEEEEEEECCCCC
GWHGLHFHEKADCSKSDFTSAGGHTHGGGERVHGLLNPEANETGDLPNLYAGADGAGAAE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEEEECCCCCCCCCCCCEECCCCCCCHHH
VYTTLTSLKALRDADGSAVVIHANADDHKTQPIGGAGARVACAVIK
HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEC
>Mature Secondary Structure
MRHMIALAATAALAASAASAQTDSVTTELKNSAGQAMGSVTLTQGPKGVVMRVEAKGLTP
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCEEEEECCCCCEEEEEEECCCCC
GWHGLHFHEKADCSKSDFTSAGGHTHGGGERVHGLLNPEANETGDLPNLYAGADGAGAAE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEEEECCCCCCCCCCCCEECCCCCCCHHH
VYTTLTSLKALRDADGSAVVIHANADDHKTQPIGGAGARVACAVIK
HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2345128; 11259647; 7050107 [H]