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The map label for this gene is flgF [H]

Identifier: 197104382

GI number: 197104382

Start: 1009315

End: 1010052

Strand: Reverse

Name: flgF [H]

Synonym: PHZ_c0916

Alternate gene names: 197104382

Gene position: 1010052-1009315 (Counterclockwise)

Preceding gene: 197104388

Following gene: 197104381

Centisome position: 25.27

GC content: 68.7

Gene sequence:

>738_bases
ATGGACAACGCCCTCTACGTCGGACTGTCGCAGCAGATGGTGCTCCGTCGCGAGATGGAGATCATCGCGAACAACATCGC
CAACCTCGACACCACCGGCTTCAAGGTCGAATCGCTCATGCAGAAGACCGACGCGCGCGCGCCGGCCATGACGCTGGGCG
GGCCCAAGCCCGTGAAGTTCGTCACCGCCGACGGCGTCGCCCGCGACTTCGGCCAGGGCGCCCTGCGGCGCACCGACGGC
GAACTGGACTTCGCCATCGAGGGCCAGGGCTTCTTCCGCCTGCAGGGCCCGGACGGCGAGCGCTTCACCCGCGACGGACG
CTTCCGCACCGACGAGATCGGCCGGCTGGTGGCCCAGAACGGCTCGCCGGTGATGGACGAGGGCGGCGGCGAGATCGTCA
TCGACCCCGAGAAGGGCCAGGTGTCGGTCAGCGCCGACGGAGTGGTCAGCCAGGGCGCCGAGCGGATCGGCAAGATCGGC
ATGTTCACCTTCGAGACCCTGGCCGCGCTCGAGAAGACCGGGGACAACCAGTACCGCAACACCGCCAACCTGCTGCCGCA
GCCCGCCGCCGAGGCCCGCCTGCGCCAGGGGATGCTCGAGGGCTCCAACGTCCAGGCGATCCTGGAGATCACCCGCATGG
TCGAGGTGAGCCGGGCCTACGAGCGCACCAACCGAATGATCGATTCCGAAGCCGACCTCTCGCGCCGATCCGTCGAGCGC
CTGGGGAAGGTCCAGTAA

Upstream 100 bases:

>100_bases
TTAACTTTATTAGTTGCTGGAATTCCTTGGCTTTTTGGATTGGCCCGAAGCTTGCAGCGAGCGGGGCAGGAAAGTCGTTC
GCCAAGGCCCGCCCGTTAAG

Downstream 100 bases:

>100_bases
GGGAGTAGCGACCGATGCAGGCGCTCCGCACAGCCGCCACGGGCATGGCCGCCCAGCAGCTCAACGTCGAGGTCATCTCG
AACAACATCGCCAACATGAA

Product: flagellar basal-body rod protein FlgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MDNALYVGLSQQMVLRREMEIIANNIANLDTTGFKVESLMQKTDARAPAMTLGGPKPVKFVTADGVARDFGQGALRRTDG
ELDFAIEGQGFFRLQGPDGERFTRDGRFRTDEIGRLVAQNGSPVMDEGGGEIVIDPEKGQVSVSADGVVSQGAERIGKIG
MFTFETLAALEKTGDNQYRNTANLLPQPAAEARLRQGMLEGSNVQAILEITRMVEVSRAYERTNRMIDSEADLSRRSVER
LGKVQ

Sequences:

>Translated_245_residues
MDNALYVGLSQQMVLRREMEIIANNIANLDTTGFKVESLMQKTDARAPAMTLGGPKPVKFVTADGVARDFGQGALRRTDG
ELDFAIEGQGFFRLQGPDGERFTRDGRFRTDEIGRLVAQNGSPVMDEGGGEIVIDPEKGQVSVSADGVVSQGAERIGKIG
MFTFETLAALEKTGDNQYRNTANLLPQPAAEARLRQGMLEGSNVQAILEITRMVEVSRAYERTNRMIDSEADLSRRSVER
LGKVQ
>Mature_245_residues
MDNALYVGLSQQMVLRREMEIIANNIANLDTTGFKVESLMQKTDARAPAMTLGGPKPVKFVTADGVARDFGQGALRRTDG
ELDFAIEGQGFFRLQGPDGERFTRDGRFRTDEIGRLVAQNGSPVMDEGGGEIVIDPEKGQVSVSADGVVSQGAERIGKIG
MFTFETLAALEKTGDNQYRNTANLLPQPAAEARLRQGMLEGSNVQAILEITRMVEVSRAYERTNRMIDSEADLSRRSVER
LGKVQ

Specific function: Unknown

COG id: COG4786

COG function: function code N; Flagellar basal body rod protein

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flagella basal body rod proteins family [H]

Homologues:

Organism=Escherichia coli, GI1787318, Length=260, Percent_Identity=31.5384615384615, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1787317, Length=256, Percent_Identity=29.296875, Blast_Score=84, Evalue=7e-18,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010930
- InterPro:   IPR001444
- InterPro:   IPR019776
- InterPro:   IPR020013
- InterPro:   IPR012836 [H]

Pfam domain/function: PF06429 DUF1078; PF00460 Flg_bb_rod [H]

EC number: NA

Molecular weight: Translated: 26815; Mature: 26815

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: PS00588 FLAGELLA_BB_ROD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNALYVGLSQQMVLRREMEIIANNIANLDTTGFKVESLMQKTDARAPAMTLGGPKPVKF
CCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCEEE
VTADGVARDFGQGALRRTDGELDFAIEGQGFFRLQGPDGERFTRDGRFRTDEIGRLVAQN
EECCCHHHHHCCCHHCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCC
GSPVMDEGGGEIVIDPEKGQVSVSADGVVSQGAERIGKIGMFTFETLAALEKTGDNQYRN
CCCCEECCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
TANLLPQPAAEARLRQGMLEGSNVQAILEITRMVEVSRAYERTNRMIDSEADLSRRSVER
HHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LGKVQ
HCCCC
>Mature Secondary Structure
MDNALYVGLSQQMVLRREMEIIANNIANLDTTGFKVESLMQKTDARAPAMTLGGPKPVKF
CCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCEEE
VTADGVARDFGQGALRRTDGELDFAIEGQGFFRLQGPDGERFTRDGRFRTDEIGRLVAQN
EECCCHHHHHCCCHHCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCC
GSPVMDEGGGEIVIDPEKGQVSVSADGVVSQGAERIGKIGMFTFETLAALEKTGDNQYRN
CCCCEECCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
TANLLPQPAAEARLRQGMLEGSNVQAILEITRMVEVSRAYERTNRMIDSEADLSRRSVER
HHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LGKVQ
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1474584; 11259647 [H]