| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is viuA [H]
Identifier: 197104282
GI number: 197104282
Start: 899848
End: 902292
Strand: Direct
Name: viuA [H]
Synonym: PHZ_c0816
Alternate gene names: 197104282
Gene position: 899848-902292 (Clockwise)
Preceding gene: 197104280
Following gene: 197104287
Centisome position: 22.52
GC content: 69.04
Gene sequence:
>2445_bases ATGCTGCACCGTCCGGGCGCCCGCGCGCGCCTCATCCTTGGCGCTTCCGTCCTGGCGCTGCTCGCCGGGCCCGAGGCCTA CGCGCAGGCCGCCGCCCAGACGGCCGGGCAGGAGACCGCGCTCGAGACCCTGGTGGTCACGGCCCAGCGGCGGGAGGAGA GCGCCAACTCGGTCGGCATGGCGATCCAGGCGGTGCGCGGCGAGGTGCTGGAACAGCTCCACGTCACCGACACCCGCGAC CTCAGCGCCTTCGCGCCCAGCTTCACGGTTTCCCAGAGCTACCAGGGGGTGCCGACCTACACGCTGCGCGGCATCGGCTT CAACACGATCAACCTGTCGGCCACCTCCACCGTCGGCACCTATGTGGACGAGGTGGCCTACGCCTATCCGTTCATGATGA CCGGCCCGGTGTTCGACCTGGAGCGGGTCGAGGTGCTGAAGGGGCCGCAGGGGACGCTCTACGGCCGCAACACCACCGCC GGCCTGATCGACTTCGTCACCCGCAAGCCCACAGAGGACGTCGAGGGCGCGCTCACCGCCGAGATCGGCAACTACCAGAC GAAGAACCTCGAGGGCTACGTCAGCGGCCCGCTGGCCGAGGGCCTGGCCGGGCGGCTCGCGTTCCGCATGGAGAACAGCG ACAAGGGCTGGCAGGTCTCCAACACCCGTGGCGAGCGGCTGGGCGAGGCCGACCGCTGGGGCGTCCGCGGCTCGCTCGCC TTCAATCCCAACGACCGGCTCTCGGTCGACGCCTCGGTCAGCTACTGGAAGAACCAGTCCGACACCGTCGCGGCCCAGGG GATCGGCTTCACCCCGGCGACCGCCAACAGCCCGTTCCTGGCGCCGGGCCTGGCCGACTACATCGCCGCCAATCCGCCGA CCAAGGCCACCCAGGCCGACTGGGCGCCCGAGTCCGTCCGCGGCGTCGACATCGGCATCGGCCCCGGCCACGCCGGCCCG CTGCGCGAGGACAACACGTTCCTGGGCGTGAAGCTGAAGGTCGCCTACGACCTCTCCGACAGCGTCCGGCTCGTCTCGCT CACCGGCTACAACGACCTCAAGCGCCGGGCGCTGTTCGACTGGAGCGGCGCCCCTTACGAGATCCTGCTGCAGCGCGCCG TGGGCGACATCGAGTCCTTCTCCGAGGAGCTGCACCTCGAAGGCTCGACCGACCGCGCCAACTGGCTGGTGGGCGCCTAC TACGCCAAGGACGAGATCCTCGATTCCAACCGCACCCTGCTGGGCCAGAACGCCAACGTGGGTCTGATCCGCTTCGCCGG CGCGGGCCTCCTCGCCACTCCGTTCAACACGGGCGGCTACACGGCCGAGCAGATGGCCCAGGCGTTCCGCACCTACGTCG ACCGCGGCGACATCGAGACGAAGACCTGGAGCGTCTTCGCCAACGGCGACTACAGGATCACCGAAGCCCTCAAGCTCACC CTCGGCGTGCGCTACACCGAGGACAAGCAGGACTACGCCGGCTGCTCGCGCGACTTCAACGGCAGCATGCTGCCCAACGT CAACGTCGTGAACCGGGCGCTCTACTTCCAGACCTACGGCGTCATCCCCGACCAGATCGCCGCGAACGCCTGCAACACCT TCGATCCCGCGACCGGCCAGTTCGGCCTGGTGACCTCCACCCTGGACGAGAACAACGTCGCCTGGCGCGTGGCGCTGGAC TGGACCCCGGCCGAGAACCTCCTGCTGTTCGGCTCGGTCTCGCGCGGCGCCAAGGCCGGGGCCACACCGATCAACGCCGC GAACATCTCGACCCAGAACGCTCCGGCCAACCAGGAGCTGCTCACCGCCTACGAGGTCGGCTTCAAGGCCGGCCTGCTCG ATCGGCGCATGCAGGCCAACGTCAGCGCCTTCTACTACGACTACGAGGACAAGCAGCTCAGCGTCTATTTCGCCGACCCG ATCTACACCGCGCTGTCGCGGCTGCAGAACGTGCCCAAGGGCGAGGCCTACGGGATCGACGGCGAGGTCACCTGGCGGAT CATGCCCGAGCTGACGCTGATCGCCTCGGGCACCCTGCTGCACACCGAGGTCAAGGGCTACGTCGGGATCAACGCCGCGG GCCAGCCGCAGGACTTCGACGGTGCGCCCTTCCTCTACAGCCCCAAGCGCTCGTTCGCGCTCACCGCGCTCTACAGCCGC GAGCTGACCAGCGAGCTTGGCCTGCAGGCGGCGGTGAACGCCCGCTGGCAGAGCGACAGCCACGCCGACCTGGAGGGCGA TCCCCGGTTCGTCATCGAGGACTACGGTCTGGTGAACGCCTCCATCGGCCTGCACAGCCTGGACGAGCGCTGGCGCGTCC AGCTCTGGGGCCGCAACCTCACCGACGAGTATTACTGGACCGCCGTCAGCTCGAACGCGAACGTCGTGGTCCGCTTCCCC GGCCAGCCGCGCACCTACGGCGCCTCGCTGACCCTCAGCTTCTAG
Upstream 100 bases:
>100_bases GCGGCGACCTGTCCTCGACTTCAGGTTCTGCGCCTGCCGCCCGATCCGGGAGCGGCCATGAGACGGCGCCCATGCAGGCG ACGTCCGAGGGAGGGATACG
Downstream 100 bases:
>100_bases GTCCCGGTTCCTCCCCTGAACGCCGGGACCGCCCTCGGGCGTGTCCCGGTGTCCTTTTTCAGAGGCGCTCCAGCACCCGC CAGGTGAAGGGGAAGTCGTC
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 814; Mature: 814
Protein sequence:
>814_residues MLHRPGARARLILGASVLALLAGPEAYAQAAAQTAGQETALETLVVTAQRREESANSVGMAIQAVRGEVLEQLHVTDTRD LSAFAPSFTVSQSYQGVPTYTLRGIGFNTINLSATSTVGTYVDEVAYAYPFMMTGPVFDLERVEVLKGPQGTLYGRNTTA GLIDFVTRKPTEDVEGALTAEIGNYQTKNLEGYVSGPLAEGLAGRLAFRMENSDKGWQVSNTRGERLGEADRWGVRGSLA FNPNDRLSVDASVSYWKNQSDTVAAQGIGFTPATANSPFLAPGLADYIAANPPTKATQADWAPESVRGVDIGIGPGHAGP LREDNTFLGVKLKVAYDLSDSVRLVSLTGYNDLKRRALFDWSGAPYEILLQRAVGDIESFSEELHLEGSTDRANWLVGAY YAKDEILDSNRTLLGQNANVGLIRFAGAGLLATPFNTGGYTAEQMAQAFRTYVDRGDIETKTWSVFANGDYRITEALKLT LGVRYTEDKQDYAGCSRDFNGSMLPNVNVVNRALYFQTYGVIPDQIAANACNTFDPATGQFGLVTSTLDENNVAWRVALD WTPAENLLLFGSVSRGAKAGATPINAANISTQNAPANQELLTAYEVGFKAGLLDRRMQANVSAFYYDYEDKQLSVYFADP IYTALSRLQNVPKGEAYGIDGEVTWRIMPELTLIASGTLLHTEVKGYVGINAAGQPQDFDGAPFLYSPKRSFALTALYSR ELTSELGLQAAVNARWQSDSHADLEGDPRFVIEDYGLVNASIGLHSLDERWRVQLWGRNLTDEYYWTAVSSNANVVVRFP GQPRTYGASLTLSF
Sequences:
>Translated_814_residues MLHRPGARARLILGASVLALLAGPEAYAQAAAQTAGQETALETLVVTAQRREESANSVGMAIQAVRGEVLEQLHVTDTRD LSAFAPSFTVSQSYQGVPTYTLRGIGFNTINLSATSTVGTYVDEVAYAYPFMMTGPVFDLERVEVLKGPQGTLYGRNTTA GLIDFVTRKPTEDVEGALTAEIGNYQTKNLEGYVSGPLAEGLAGRLAFRMENSDKGWQVSNTRGERLGEADRWGVRGSLA FNPNDRLSVDASVSYWKNQSDTVAAQGIGFTPATANSPFLAPGLADYIAANPPTKATQADWAPESVRGVDIGIGPGHAGP LREDNTFLGVKLKVAYDLSDSVRLVSLTGYNDLKRRALFDWSGAPYEILLQRAVGDIESFSEELHLEGSTDRANWLVGAY YAKDEILDSNRTLLGQNANVGLIRFAGAGLLATPFNTGGYTAEQMAQAFRTYVDRGDIETKTWSVFANGDYRITEALKLT LGVRYTEDKQDYAGCSRDFNGSMLPNVNVVNRALYFQTYGVIPDQIAANACNTFDPATGQFGLVTSTLDENNVAWRVALD WTPAENLLLFGSVSRGAKAGATPINAANISTQNAPANQELLTAYEVGFKAGLLDRRMQANVSAFYYDYEDKQLSVYFADP IYTALSRLQNVPKGEAYGIDGEVTWRIMPELTLIASGTLLHTEVKGYVGINAAGQPQDFDGAPFLYSPKRSFALTALYSR ELTSELGLQAAVNARWQSDSHADLEGDPRFVIEDYGLVNASIGLHSLDERWRVQLWGRNLTDEYYWTAVSSNANVVVRFP GQPRTYGASLTLSF >Mature_814_residues MLHRPGARARLILGASVLALLAGPEAYAQAAAQTAGQETALETLVVTAQRREESANSVGMAIQAVRGEVLEQLHVTDTRD LSAFAPSFTVSQSYQGVPTYTLRGIGFNTINLSATSTVGTYVDEVAYAYPFMMTGPVFDLERVEVLKGPQGTLYGRNTTA GLIDFVTRKPTEDVEGALTAEIGNYQTKNLEGYVSGPLAEGLAGRLAFRMENSDKGWQVSNTRGERLGEADRWGVRGSLA FNPNDRLSVDASVSYWKNQSDTVAAQGIGFTPATANSPFLAPGLADYIAANPPTKATQADWAPESVRGVDIGIGPGHAGP LREDNTFLGVKLKVAYDLSDSVRLVSLTGYNDLKRRALFDWSGAPYEILLQRAVGDIESFSEELHLEGSTDRANWLVGAY YAKDEILDSNRTLLGQNANVGLIRFAGAGLLATPFNTGGYTAEQMAQAFRTYVDRGDIETKTWSVFANGDYRITEALKLT LGVRYTEDKQDYAGCSRDFNGSMLPNVNVVNRALYFQTYGVIPDQIAANACNTFDPATGQFGLVTSTLDENNVAWRVALD WTPAENLLLFGSVSRGAKAGATPINAANISTQNAPANQELLTAYEVGFKAGLLDRRMQANVSAFYYDYEDKQLSVYFADP IYTALSRLQNVPKGEAYGIDGEVTWRIMPELTLIASGTLLHTEVKGYVGINAAGQPQDFDGAPFLYSPKRSFALTALYSR ELTSELGLQAAVNARWQSDSHADLEGDPRFVIEDYGLVNASIGLHSLDERWRVQLWGRNLTDEYYWTAVSSNANVVVRFP GQPRTYGASLTLSF
Specific function: Receptor for ferric vibriobactin [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug [H]
EC number: NA
Molecular weight: Translated: 88508; Mature: 88508
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: PS00395 ALANINE_RACEMASE ; PS00430 TONB_DEPENDENT_REC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLHRPGARARLILGASVLALLAGPEAYAQAAAQTAGQETALETLVVTAQRREESANSVGM CCCCCCCCEEEEEHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHH AIQAVRGEVLEQLHVTDTRDLSAFAPSFTVSQSYQGVPTYTLRGIGFNTINLSATSTVGT HHHHHHHHHHHHHCCCCCCCHHHCCCCCEECCCCCCCCCEEEECCCEEEEEEEECCHHHH YVDEVAYAYPFMMTGPVFDLERVEVLKGPQGTLYGRNTTAGLIDFVTRKPTEDVEGALTA HHHHHHHHCCCEEECCCCCCHHHHHHCCCCCCEECCCCCHHHHHHHHCCCCCHHCCEEEE EIGNYQTKNLEGYVSGPLAEGLAGRLAFRMENSDKGWQVSNTRGERLGEADRWGVRGSLA ECCCEECCCCCEEECCCHHHCCCCEEEEEEECCCCCEEEECCCCHHCCCCCCCCCEEEEE FNPNDRLSVDASVSYWKNQSDTVAAQGIGFTPATANSPFLAPGLADYIAANPPTKATQAD ECCCCCEEEEEEHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCC WAPESVRGVDIGIGPGHAGPLREDNTFLGVKLKVAYDLSDSVRLVSLTGYNDLKRRALFD CCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEECCCHHHHHEEEC WSGAPYEILLQRAVGDIESFSEELHLEGSTDRANWLVGAYYAKDEILDSNRTLLGQNANV CCCCCHHHHHHHHHCCHHHHHHHEEECCCCCCCCEEEEEEEEHHHHCCCCCEEECCCCCE GLIRFAGAGLLATPFNTGGYTAEQMAQAFRTYVDRGDIETKTWSVFANGDYRITEALKLT EEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEEEEEE LGVRYTEDKQDYAGCSRDFNGSMLPNVNVVNRALYFQTYGVIPDQIAANACNTFDPATGQ EEEEECCCCHHHCCCCCCCCCCCCCCCHHHHHEEEEEECCCCHHHHHHCCCCCCCCCCCC FGLVTSTLDENNVAWRVALDWTPAENLLLFGSVSRGAKAGATPINAANISTQNAPANQEL CEEEEEECCCCCEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHH LTAYEVGFKAGLLDRRMQANVSAFYYDYEDKQLSVYFADPIYTALSRLQNVPKGEAYGID HHHHHHCHHHHHHHHHHHCCCEEEEEEECCCEEEEEECCHHHHHHHHHHCCCCCCEECCC GEVTWRIMPELTLIASGTLLHTEVKGYVGINAAGQPQDFDGAPFLYSPKRSFALTALYSR CEEEEEEECCEEEEECCEEEEEEECCEEEECCCCCCCCCCCCCEEECCCCCEEEEHHHHH ELTSELGLQAAVNARWQSDSHADLEGDPRFVIEDYGLVNASIGLHSLDERWRVQLWGRNL HHHHHHCCEEEECCCCCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCCEEEEECCCCC TDEYYWTAVSSNANVVVRFPGQPRTYGASLTLSF CCCEEEEEECCCCEEEEECCCCCCCCCCEEEEEC >Mature Secondary Structure MLHRPGARARLILGASVLALLAGPEAYAQAAAQTAGQETALETLVVTAQRREESANSVGM CCCCCCCCEEEEEHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHH AIQAVRGEVLEQLHVTDTRDLSAFAPSFTVSQSYQGVPTYTLRGIGFNTINLSATSTVGT HHHHHHHHHHHHHCCCCCCCHHHCCCCCEECCCCCCCCCEEEECCCEEEEEEEECCHHHH YVDEVAYAYPFMMTGPVFDLERVEVLKGPQGTLYGRNTTAGLIDFVTRKPTEDVEGALTA HHHHHHHHCCCEEECCCCCCHHHHHHCCCCCCEECCCCCHHHHHHHHCCCCCHHCCEEEE EIGNYQTKNLEGYVSGPLAEGLAGRLAFRMENSDKGWQVSNTRGERLGEADRWGVRGSLA ECCCEECCCCCEEECCCHHHCCCCEEEEEEECCCCCEEEECCCCHHCCCCCCCCCEEEEE FNPNDRLSVDASVSYWKNQSDTVAAQGIGFTPATANSPFLAPGLADYIAANPPTKATQAD ECCCCCEEEEEEHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCC WAPESVRGVDIGIGPGHAGPLREDNTFLGVKLKVAYDLSDSVRLVSLTGYNDLKRRALFD CCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEECCCHHHHHEEEC WSGAPYEILLQRAVGDIESFSEELHLEGSTDRANWLVGAYYAKDEILDSNRTLLGQNANV CCCCCHHHHHHHHHCCHHHHHHHEEECCCCCCCCEEEEEEEEHHHHCCCCCEEECCCCCE GLIRFAGAGLLATPFNTGGYTAEQMAQAFRTYVDRGDIETKTWSVFANGDYRITEALKLT EEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEEEEEE LGVRYTEDKQDYAGCSRDFNGSMLPNVNVVNRALYFQTYGVIPDQIAANACNTFDPATGQ EEEEECCCCHHHCCCCCCCCCCCCCCCHHHHHEEEEEECCCCHHHHHHCCCCCCCCCCCC FGLVTSTLDENNVAWRVALDWTPAENLLLFGSVSRGAKAGATPINAANISTQNAPANQEL CEEEEEECCCCCEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHH LTAYEVGFKAGLLDRRMQANVSAFYYDYEDKQLSVYFADPIYTALSRLQNVPKGEAYGID HHHHHHCHHHHHHHHHHHCCCEEEEEEECCCEEEEEECCHHHHHHHHHHCCCCCCEECCC GEVTWRIMPELTLIASGTLLHTEVKGYVGINAAGQPQDFDGAPFLYSPKRSFALTALYSR CEEEEEEECCEEEEECCEEEEEEECCEEEECCCCCCCCCCCCCEEECCCCCEEEEHHHHH ELTSELGLQAAVNARWQSDSHADLEGDPRFVIEDYGLVNASIGLHSLDERWRVQLWGRNL HHHHHHCCEEEECCCCCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCCEEEEECCCCC TDEYYWTAVSSNANVVVRFPGQPRTYGASLTLSF CCCEEEEEECCCCEEEEECCCCCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1317381 [H]