| Definition | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 chromosome, complete genome. |
|---|---|
| Accession | NC_011094 |
| Length | 4,709,075 |
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The map label for this gene is yciK [H]
Identifier: 194738279
GI number: 194738279
Start: 1791748
End: 1792509
Strand: Direct
Name: yciK [H]
Synonym: SeSA_A1849
Alternate gene names: 194738279
Gene position: 1791748-1792509 (Clockwise)
Preceding gene: 194735847
Following gene: 194736591
Centisome position: 38.05
GC content: 56.56
Gene sequence:
>762_bases ATGCATTACCAACCGAAACAAGATCTATTGCAAAACCGCATTATTCTGGTCACTGGCGCCAGCGATGGCATTGGGCGGGA AGCCGCGCTTACGTATGCGCGTTACGGCGCAACGGTGATTCTGCTGGGACGCAACGAAGAGAAACTGCGTCGGGTCGCGC AGCACATTGCTGACGAGCAACATGTTCAACCACAGTGGTTTACGCTCGATCTGCTGACCTGCACCGCTGAAGAGTGCCGG CAAGTGGCCGACCGCATCGCCGCGCACTATCCCCGCCTGGATGGCGTCCTGCACAATGCCGGGTTACTGGGGGAAATCGG TCCAATGAGCGAACAAGATCCGCAGATCTGGCAGGATGTCATGCAGGTAAACGTTAACGCCACCTTTATGCTCACCCAGG CGCTGTTACCGTTATTATTGAAGTCCGATGCCGGCTCGCTGGTCTTTACGTCATCAAGCGTTGGCCGTCAGGGGCGCGCC AACTGGGGCGCCTATGCCACCTCGAAGTTTGCTACTGAAGGAATGATGCAGGTGCTGGCGGACGAATACCAGAACCGTTC TCTACGTGTTAACTGCATTAACCCGGGCGGCACGCGCACCGGTATGCGCGCCAGCGCCTTTCCGACGGAAGATCCACAGA AATTAAAAACGCCTGCCGATATTATGCCGCTTTACCTGTGGCTTATGGGCGACGACAGTCGTCGTAAAACCGGTATGACC TTTGACGCCCAACCGGGCCGTAAACCAGGAATCGCCCAATGA
Upstream 100 bases:
>100_bases CTGATTGAAAAAAAAGGCGCTTTCAGGCATAAACCCGAAAAGTTAACGCGAAGATAAGACAACCTGGCAGGACGGTGCAC CACGCCGTTGAGGAGTAGCC
Downstream 100 bases:
>100_bases GTGATGAACGCTATCAGCGGCGCCAGCAGAAGGTAAAAGATCGGGTTGACGCCCGCGTCGCCCAGGCACAGGAAGAGCGC GGTATTATTATCGTGTTTAC
Product: short chain dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 253; Mature: 253
Protein sequence:
>253_residues MHYQPKQDLLQNRIILVTGASDGIGREAALTYARYGATVILLGRNEEKLRRVAQHIADEQHVQPQWFTLDLLTCTAEECR QVADRIAAHYPRLDGVLHNAGLLGEIGPMSEQDPQIWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRA NWGAYATSKFATEGMMQVLADEYQNRSLRVNCINPGGTRTGMRASAFPTEDPQKLKTPADIMPLYLWLMGDDSRRKTGMT FDAQPGRKPGIAQ
Sequences:
>Translated_253_residues MHYQPKQDLLQNRIILVTGASDGIGREAALTYARYGATVILLGRNEEKLRRVAQHIADEQHVQPQWFTLDLLTCTAEECR QVADRIAAHYPRLDGVLHNAGLLGEIGPMSEQDPQIWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRA NWGAYATSKFATEGMMQVLADEYQNRSLRVNCINPGGTRTGMRASAFPTEDPQKLKTPADIMPLYLWLMGDDSRRKTGMT FDAQPGRKPGIAQ >Mature_253_residues MHYQPKQDLLQNRIILVTGASDGIGREAALTYARYGATVILLGRNEEKLRRVAQHIADEQHVQPQWFTLDLLTCTAEECR QVADRIAAHYPRLDGVLHNAGLLGEIGPMSEQDPQIWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRA NWGAYATSKFATEGMMQVLADEYQNRSLRVNCINPGGTRTGMRASAFPTEDPQKLKTPADIMPLYLWLMGDDSRRKTGMT FDAQPGRKPGIAQ
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI20149619, Length=206, Percent_Identity=30.5825242718447, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI142976729, Length=210, Percent_Identity=29.0476190476191, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI32483357, Length=249, Percent_Identity=26.5060240963855, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI33667109, Length=198, Percent_Identity=28.2828282828283, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI5031737, Length=198, Percent_Identity=28.2828282828283, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI4504505, Length=250, Percent_Identity=27.2, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI32455239, Length=205, Percent_Identity=31.219512195122, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI5031765, Length=205, Percent_Identity=31.219512195122, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI66933014, Length=246, Percent_Identity=28.4552845528455, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI40807363, Length=203, Percent_Identity=26.6009852216749, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI157739938, Length=197, Percent_Identity=26.3959390862944, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI226371731, Length=214, Percent_Identity=28.0373831775701, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI15277342, Length=261, Percent_Identity=27.9693486590038, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI126723191, Length=192, Percent_Identity=27.0833333333333, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI4503817, Length=199, Percent_Identity=26.6331658291457, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI210032110, Length=193, Percent_Identity=26.4248704663212, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI7657478, Length=224, Percent_Identity=28.125, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI25282469, Length=224, Percent_Identity=25.8928571428571, Blast_Score=68, Evalue=6e-12, Organism=Homo sapiens, GI7705855, Length=207, Percent_Identity=25.1207729468599, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI40548397, Length=206, Percent_Identity=27.1844660194175, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI214010158, Length=206, Percent_Identity=27.1844660194175, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI214010156, Length=206, Percent_Identity=27.1844660194175, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI22758144, Length=206, Percent_Identity=27.1844660194175, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI7705925, Length=251, Percent_Identity=25.8964143426295, Blast_Score=65, Evalue=4e-11, Organism=Escherichia coli, GI1787526, Length=253, Percent_Identity=88.9328063241107, Blast_Score=456, Evalue=1e-130, Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=28.5714285714286, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI87082100, Length=257, Percent_Identity=30.7392996108949, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1789378, Length=240, Percent_Identity=30.4166666666667, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1786701, Length=211, Percent_Identity=29.3838862559242, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1786812, Length=207, Percent_Identity=26.0869565217391, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1787905, Length=230, Percent_Identity=28.2608695652174, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1790717, Length=193, Percent_Identity=26.9430051813472, Blast_Score=67, Evalue=8e-13, Organism=Escherichia coli, GI1789208, Length=190, Percent_Identity=24.7368421052632, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI2367175, Length=248, Percent_Identity=26.6129032258064, Blast_Score=64, Evalue=8e-12, Organism=Escherichia coli, GI1787820, Length=183, Percent_Identity=24.5901639344262, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1788459, Length=239, Percent_Identity=22.5941422594142, Blast_Score=62, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17562908, Length=202, Percent_Identity=33.1683168316832, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI71994600, Length=249, Percent_Identity=27.710843373494, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI71994604, Length=189, Percent_Identity=31.2169312169312, Blast_Score=87, Evalue=8e-18, Organism=Caenorhabditis elegans, GI71997402, Length=254, Percent_Identity=27.9527559055118, Blast_Score=87, Evalue=9e-18, Organism=Caenorhabditis elegans, GI17562906, Length=234, Percent_Identity=28.6324786324786, Blast_Score=84, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17562904, Length=213, Percent_Identity=27.6995305164319, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17560150, Length=211, Percent_Identity=28.436018957346, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17551412, Length=221, Percent_Identity=28.9592760180996, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17570069, Length=204, Percent_Identity=28.4313725490196, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17560220, Length=205, Percent_Identity=28.2926829268293, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI115534694, Length=247, Percent_Identity=27.9352226720648, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17561402, Length=242, Percent_Identity=23.1404958677686, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17531453, Length=197, Percent_Identity=29.9492385786802, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17544670, Length=203, Percent_Identity=29.064039408867, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17560676, Length=258, Percent_Identity=24.8062015503876, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI193203117, Length=209, Percent_Identity=27.2727272727273, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI193203115, Length=209, Percent_Identity=27.2727272727273, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17555706, Length=255, Percent_Identity=25.8823529411765, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17567345, Length=200, Percent_Identity=27, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17508895, Length=212, Percent_Identity=26.4150943396226, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17562990, Length=195, Percent_Identity=28.2051282051282, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI193204405, Length=212, Percent_Identity=27.3584905660377, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17568967, Length=244, Percent_Identity=26.2295081967213, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17538480, Length=215, Percent_Identity=24.6511627906977, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI115534660, Length=240, Percent_Identity=27.0833333333333, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17560176, Length=193, Percent_Identity=27.4611398963731, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17559104, Length=212, Percent_Identity=26.8867924528302, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17562910, Length=196, Percent_Identity=26.0204081632653, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI72000259, Length=202, Percent_Identity=25.2475247524752, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17538182, Length=215, Percent_Identity=29.3023255813954, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI25147288, Length=249, Percent_Identity=24.4979919678715, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17563726, Length=204, Percent_Identity=25, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=229, Percent_Identity=30.5676855895196, Blast_Score=86, Evalue=4e-18, Organism=Saccharomyces cerevisiae, GI6322227, Length=219, Percent_Identity=29.6803652968037, Blast_Score=80, Evalue=4e-16, Organism=Saccharomyces cerevisiae, GI6322861, Length=235, Percent_Identity=25.1063829787234, Blast_Score=73, Evalue=5e-14, Organism=Saccharomyces cerevisiae, GI6322226, Length=195, Percent_Identity=26.1538461538462, Blast_Score=71, Evalue=2e-13, Organism=Drosophila melanogaster, GI24644339, Length=249, Percent_Identity=29.3172690763052, Blast_Score=107, Evalue=7e-24, Organism=Drosophila melanogaster, GI28571526, Length=253, Percent_Identity=29.6442687747036, Blast_Score=102, Evalue=3e-22, Organism=Drosophila melanogaster, GI23397609, Length=187, Percent_Identity=32.620320855615, Blast_Score=98, Evalue=7e-21, Organism=Drosophila melanogaster, GI21355319, Length=247, Percent_Identity=26.3157894736842, Blast_Score=97, Evalue=8e-21, Organism=Drosophila melanogaster, GI24643142, Length=205, Percent_Identity=35.609756097561, Blast_Score=94, Evalue=8e-20, Organism=Drosophila melanogaster, GI21358495, Length=208, Percent_Identity=29.3269230769231, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI21357041, Length=252, Percent_Identity=26.1904761904762, Blast_Score=87, Evalue=7e-18, Organism=Drosophila melanogaster, GI24640492, Length=202, Percent_Identity=27.2277227722772, Blast_Score=84, Evalue=8e-17, Organism=Drosophila melanogaster, GI281364892, Length=208, Percent_Identity=30.7692307692308, Blast_Score=81, Evalue=6e-16, Organism=Drosophila melanogaster, GI24584748, Length=191, Percent_Identity=29.3193717277487, Blast_Score=80, Evalue=9e-16, Organism=Drosophila melanogaster, GI161076933, Length=191, Percent_Identity=29.3193717277487, Blast_Score=80, Evalue=9e-16, Organism=Drosophila melanogaster, GI28574402, Length=194, Percent_Identity=30.9278350515464, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24639444, Length=254, Percent_Identity=27.9527559055118, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24584744, Length=194, Percent_Identity=30.9278350515464, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI45553409, Length=217, Percent_Identity=28.110599078341, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI24647948, Length=217, Percent_Identity=28.110599078341, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI24647946, Length=217, Percent_Identity=28.110599078341, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI18859837, Length=223, Percent_Identity=28.6995515695067, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24584752, Length=228, Percent_Identity=27.1929824561404, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24581726, Length=211, Percent_Identity=23.2227488151659, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 28043; Mature: 28043
Theoretical pI: Translated: 7.56; Mature: 7.56
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHYQPKQDLLQNRIILVTGASDGIGREAALTYARYGATVILLGRNEEKLRRVAQHIADEQ CCCCCHHHHHHCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHH HVQPQWFTLDLLTCTAEECRQVADRIAAHYPRLDGVLHNAGLLGEIGPMSEQDPQIWQDV CCCCCEEEEEHHHHCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHH MQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYATSKFATEGMMQVLA HHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH DEYQNRSLRVNCINPGGTRTGMRASAFPTEDPQKLKTPADIMPLYLWLMGDDSRRKTGMT HHHCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCHHHHEEEEEEECCCCCCCCCCE FDAQPGRKPGIAQ ECCCCCCCCCCCC >Mature Secondary Structure MHYQPKQDLLQNRIILVTGASDGIGREAALTYARYGATVILLGRNEEKLRRVAQHIADEQ CCCCCHHHHHHCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHH HVQPQWFTLDLLTCTAEECRQVADRIAAHYPRLDGVLHNAGLLGEIGPMSEQDPQIWQDV CCCCCEEEEEHHHHCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHH MQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYATSKFATEGMMQVLA HHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH DEYQNRSLRVNCINPGGTRTGMRASAFPTEDPQKLKTPADIMPLYLWLMGDDSRRKTGMT HHHCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCHHHHEEEEEEECCCCCCCCCCE FDAQPGRKPGIAQ ECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Oxidoreductases; Acting on the CH-OH group of donors; With NAD or NADP as acceptor [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503; 1885549 [H]