| Definition | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 chromosome, complete genome. |
|---|---|
| Accession | NC_011094 |
| Length | 4,709,075 |
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The map label for this gene is yehB [H]
Identifier: 194738189
GI number: 194738189
Start: 2264300
End: 2266786
Strand: Reverse
Name: yehB [H]
Synonym: SeSA_A2388
Alternate gene names: 194738189
Gene position: 2266786-2264300 (Counterclockwise)
Preceding gene: 194737456
Following gene: 194733942
Centisome position: 48.14
GC content: 47.08
Gene sequence:
>2487_bases ATGGAAAAGTTAAACGCCATCACGCTGTCACTTTTTGCAGCGTTGCTTACTTCACCCGCCTGGGCTGAAGAAGAAACATT CGATACTAACTTTATGTTCGGTGGGTTGAAAGGTGAAAAGGTGTCCCGTTATCAGATTGATAGCACCAAACCCATGGCTG GCGTTTATGAGATGGACGTTTATGTCAATAAAGAATGGCGTGGAACTTATGAGGTTAATATTCAGGATGACCCCGATAGT ACCTGTATTTCTCCGGATCTGATCGCCAGCCTGGGAATTAAATTTACCCCGCAGAGTACAACAGTAGAAAATGAATGTAT TGCGCTGAAAACGGTGGTTCATGGAGGTAGTGTTTCTTATGACACTGCCGCTTTTAACCTTTATCTGAGCGTCCCTCAGG CTTATGTGTTGGAATATGAAGCGGGCTATGCGTCTCCAGAGACATGGGACCGTGGAATTAACGCTTTTTATACATCGTAT TATGCCAGCGAATATTACAGCCATTATAAAAGCGGCGGTAGTGAGAAAAATACTTACGCAAATTTTGTCAGCGGATTGAA TCTGCTTGGATGGCAATTACATTCTAACGCTAATTTTTCCAAAAGTGACAATTCAGCTGGCAAATGGCAGAGCAATACTC TGTATCTGGAACGTGATTTCCCGGCGGTACTGGGGACAACGCGTCTGGGGGAACAGTACACTAGCGGGGATATGTTTGAT ACGGTGCGCTTTCGCGGGGTGCGCTTCTGGCGTGATATGCAAATGCTGCCGCACTCTAAGCAAAATTTCGCTCCGGTTGT GCGTGGCGTGGCGCAAAGTAACGCCCTGGTGACGGTTGAACAGAATGGCTTCATTGTTTATCAAAAAGAAGTTCCGCCTG GCCCCTTTGTATTTGAAGATCTTCAGCTGGCAGGGGGGGGAGCCGATCTGGACGTGAGCGTTAAAGAGGCTGACGGTACT GTTTCACGGTTTATTGTTCCGTATTCTTCCGTTCCCAATATGGTGCAGCCCGGCGTAGCAAAATATGATTTCGCCGCCGG ACGAAGCAGAATTGAAGGAGCCTCTCAGCAAACTGATTTTCTCCAGGGAACCTATCAGTACGGGGTCAATAACCTGCTAA CGTTGTATGGCGGAACGATGTTAGCCAGCGATTATCGCTCATTTACCCTTGGCACTGGGTGGAACACGCTGATTGGCGCG GTATCTGTCGACGGTACGTTGTCTCATAGCAAGCAGGATAATGGCGATGTTTTTGATGGGGAAAGCTACCAGATTGCCTG GAATAAATATCTCCCGCAATCAGCCACCCATTTTTCTCTGGCAGCATATCGCTACTCATCACGTGATTATCGCACTTTTA ACGATCATGTCTGGGCTAATAACCGGGACAACTATCGTCGCGATGATGACGATATTTATGATATTGCAGATTATTATGAG AATGACTTTGGGCGTAAAAATACTTTCACTCTCAATATTAATCAGACGCTACCCGATGGGTGGGGATATTTTACTGCCAG CGCCCTGTGGCGCGACTATTGGGGGCGTAGCGGTACAGGCAAGGATTATCAGTTAAGCTACAGTAATACCTGGCAGCGGC TCAGTTTTACGCTATCGGCAACCCAGACTTATGACAGCGATAACCGTGAAGATAAGCGCTTTAATATCTATTTATCGATT CCCTTAACATGGGGAGTAAAGGAGAATGGGGGAAATCGTGATATCCATTTATCGAATTCCACCACCTTTGACGATCAAGG TTATGAGGCGAATAACACCAGCCTTAGCGGCACGTTCGGTAATCGCGATCAGTTTAATTATACGACTAACCTCAGCCAGC AGCGACAGGAACACCAAACGACATTCGGGGGATCAGTAACCTGGAACGCCCCGCTGGCGACGGTCGGCGGCAGTTACAGC CAATCCAATCAATATCATCAGGTGGGCGGAAATATTCAGGGAGGGCTGGTTGCATGGGCCGATGGCGTGCATTTAGCCTC TCGCCTTAATGATACTATCGCGATTATTAACGCGCCGTACCTGGAAGGCGCGGCGGTGCAGGGGCGTCCCTATTTACGTA CCAATGCAAAAGGTTATGCCGTATTTGAAGCATTGACGCCATACCGGCAAAATTTTATCTCTCTTGATGTCTCCGAGAGT GAAAGTGATGTCGCTCTGCTGGGAAACCGTAAAGTTACAGTGCCTTATCGCGGAGCCGTAGTGGTGGTTGATTTTGAAAC AGAGACCAGTAAACCTTTTTATTTCCTGGCGCGGCGCGCAGATGGCGAGCCTTTAACGTTTGGTTATGAAGTGGAAGATG ACGAGAGAAATAATGTAGGACTGGTAGGTCAGGGGAGCCGGGTATTTATTCGTACTGAAAAGGTTCCCGTTTCGGTAAAA GTCGCAACAGATAAACAACAGGGTCTTTTCTGTAAGATCACTTTTGATAAACAGATTGATGAAAATAACGTTTATATTTG TCGGTAA
Upstream 100 bases:
>100_bases AATAGTTATACCGTGACGCTAATTGATGATTCTGGGAATTATTTAAACGAGACTATCAAAATAGAAAATTAAAAGCGGGG AATTAACCTAAGGATAGATA
Downstream 100 bases:
>100_bases TCTTTAGGTGACGCCATGAAAAGACTACTATTTTTATTAATAATGATGCAGTTTACGCAGTTGGGTTACGCGGCGTGTAA TGCGACCTTAACCAACACGA
Product: fimbrial usher protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 828; Mature: 828
Protein sequence:
>828_residues MEKLNAITLSLFAALLTSPAWAEEETFDTNFMFGGLKGEKVSRYQIDSTKPMAGVYEMDVYVNKEWRGTYEVNIQDDPDS TCISPDLIASLGIKFTPQSTTVENECIALKTVVHGGSVSYDTAAFNLYLSVPQAYVLEYEAGYASPETWDRGINAFYTSY YASEYYSHYKSGGSEKNTYANFVSGLNLLGWQLHSNANFSKSDNSAGKWQSNTLYLERDFPAVLGTTRLGEQYTSGDMFD TVRFRGVRFWRDMQMLPHSKQNFAPVVRGVAQSNALVTVEQNGFIVYQKEVPPGPFVFEDLQLAGGGADLDVSVKEADGT VSRFIVPYSSVPNMVQPGVAKYDFAAGRSRIEGASQQTDFLQGTYQYGVNNLLTLYGGTMLASDYRSFTLGTGWNTLIGA VSVDGTLSHSKQDNGDVFDGESYQIAWNKYLPQSATHFSLAAYRYSSRDYRTFNDHVWANNRDNYRRDDDDIYDIADYYE NDFGRKNTFTLNINQTLPDGWGYFTASALWRDYWGRSGTGKDYQLSYSNTWQRLSFTLSATQTYDSDNREDKRFNIYLSI PLTWGVKENGGNRDIHLSNSTTFDDQGYEANNTSLSGTFGNRDQFNYTTNLSQQRQEHQTTFGGSVTWNAPLATVGGSYS QSNQYHQVGGNIQGGLVAWADGVHLASRLNDTIAIINAPYLEGAAVQGRPYLRTNAKGYAVFEALTPYRQNFISLDVSES ESDVALLGNRKVTVPYRGAVVVVDFETETSKPFYFLARRADGEPLTFGYEVEDDERNNVGLVGQGSRVFIRTEKVPVSVK VATDKQQGLFCKITFDKQIDENNVYICR
Sequences:
>Translated_828_residues MEKLNAITLSLFAALLTSPAWAEEETFDTNFMFGGLKGEKVSRYQIDSTKPMAGVYEMDVYVNKEWRGTYEVNIQDDPDS TCISPDLIASLGIKFTPQSTTVENECIALKTVVHGGSVSYDTAAFNLYLSVPQAYVLEYEAGYASPETWDRGINAFYTSY YASEYYSHYKSGGSEKNTYANFVSGLNLLGWQLHSNANFSKSDNSAGKWQSNTLYLERDFPAVLGTTRLGEQYTSGDMFD TVRFRGVRFWRDMQMLPHSKQNFAPVVRGVAQSNALVTVEQNGFIVYQKEVPPGPFVFEDLQLAGGGADLDVSVKEADGT VSRFIVPYSSVPNMVQPGVAKYDFAAGRSRIEGASQQTDFLQGTYQYGVNNLLTLYGGTMLASDYRSFTLGTGWNTLIGA VSVDGTLSHSKQDNGDVFDGESYQIAWNKYLPQSATHFSLAAYRYSSRDYRTFNDHVWANNRDNYRRDDDDIYDIADYYE NDFGRKNTFTLNINQTLPDGWGYFTASALWRDYWGRSGTGKDYQLSYSNTWQRLSFTLSATQTYDSDNREDKRFNIYLSI PLTWGVKENGGNRDIHLSNSTTFDDQGYEANNTSLSGTFGNRDQFNYTTNLSQQRQEHQTTFGGSVTWNAPLATVGGSYS QSNQYHQVGGNIQGGLVAWADGVHLASRLNDTIAIINAPYLEGAAVQGRPYLRTNAKGYAVFEALTPYRQNFISLDVSES ESDVALLGNRKVTVPYRGAVVVVDFETETSKPFYFLARRADGEPLTFGYEVEDDERNNVGLVGQGSRVFIRTEKVPVSVK VATDKQQGLFCKITFDKQIDENNVYICR >Mature_828_residues MEKLNAITLSLFAALLTSPAWAEEETFDTNFMFGGLKGEKVSRYQIDSTKPMAGVYEMDVYVNKEWRGTYEVNIQDDPDS TCISPDLIASLGIKFTPQSTTVENECIALKTVVHGGSVSYDTAAFNLYLSVPQAYVLEYEAGYASPETWDRGINAFYTSY YASEYYSHYKSGGSEKNTYANFVSGLNLLGWQLHSNANFSKSDNSAGKWQSNTLYLERDFPAVLGTTRLGEQYTSGDMFD TVRFRGVRFWRDMQMLPHSKQNFAPVVRGVAQSNALVTVEQNGFIVYQKEVPPGPFVFEDLQLAGGGADLDVSVKEADGT VSRFIVPYSSVPNMVQPGVAKYDFAAGRSRIEGASQQTDFLQGTYQYGVNNLLTLYGGTMLASDYRSFTLGTGWNTLIGA VSVDGTLSHSKQDNGDVFDGESYQIAWNKYLPQSATHFSLAAYRYSSRDYRTFNDHVWANNRDNYRRDDDDIYDIADYYE NDFGRKNTFTLNINQTLPDGWGYFTASALWRDYWGRSGTGKDYQLSYSNTWQRLSFTLSATQTYDSDNREDKRFNIYLSI PLTWGVKENGGNRDIHLSNSTTFDDQGYEANNTSLSGTFGNRDQFNYTTNLSQQRQEHQTTFGGSVTWNAPLATVGGSYS QSNQYHQVGGNIQGGLVAWADGVHLASRLNDTIAIINAPYLEGAAVQGRPYLRTNAKGYAVFEALTPYRQNFISLDVSES ESDVALLGNRKVTVPYRGAVVVVDFETETSKPFYFLARRADGEPLTFGYEVEDDERNNVGLVGQGSRVFIRTEKVPVSVK VATDKQQGLFCKITFDKQIDENNVYICR
Specific function: Involved in the export and assembly of a fimbrial subunit across the outer membrane [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1788427, Length=828, Percent_Identity=61.5942028985507, Blast_Score=1103, Evalue=0.0, Organism=Escherichia coli, GI1786332, Length=815, Percent_Identity=31.6564417177914, Blast_Score=384, Evalue=1e-107, Organism=Escherichia coli, GI1790772, Length=799, Percent_Identity=31.2891113892365, Blast_Score=365, Evalue=1e-102, Organism=Escherichia coli, GI1786744, Length=818, Percent_Identity=29.8288508557457, Blast_Score=323, Evalue=2e-89, Organism=Escherichia coli, GI1787172, Length=811, Percent_Identity=29.2231812577065, Blast_Score=323, Evalue=4e-89, Organism=Escherichia coli, GI1789533, Length=793, Percent_Identity=28.499369482976, Blast_Score=322, Evalue=8e-89, Organism=Escherichia coli, GI87081778, Length=814, Percent_Identity=26.6584766584767, Blast_Score=217, Evalue=2e-57, Organism=Escherichia coli, GI1789610, Length=791, Percent_Identity=23.2616940581542, Blast_Score=123, Evalue=4e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 92716; Mature: 92716
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKLNAITLSLFAALLTSPAWAEEETFDTNFMFGGLKGEKVSRYQIDSTKPMAGVYEMDV CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCEEEEEE YVNKEWRGTYEVNIQDDPDSTCISPDLIASLGIKFTPQSTTVENECIALKTVVHGGSVSY EECCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEECCCCCCCCCCEEEEEEEEECCCCEE DTAAFNLYLSVPQAYVLEYEAGYASPETWDRGINAFYTSYYASEYYSHYKSGGSEKNTYA CEEEEEEEEECCCEEEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHH NFVSGLNLLGWQLHSNANFSKSDNSAGKWQSNTLYLERDFPAVLGTTRLGEQYTSGDMFD HHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHCCCCCCCCCCCCCCEE TVRFRGVRFWRDMQMLPHSKQNFAPVVRGVAQSNALVTVEQNGFIVYQKEVPPGPFVFED HHHHCEEHEEHHHHHCCCCCCCHHHHHHHHHCCCEEEEEECCCEEEEECCCCCCCEEEEE LQLAGGGADLDVSVKEADGTVSRFIVPYSSVPNMVQPGVAKYDFAAGRSRIEGASQQTDF EEEECCCCCEEEEEECCCCCEEEEEEECCCCCCHHCCCCCEEEHHCCHHHHCCCCCCHHH LQGTYQYGVNNLLTLYGGTMLASDYRSFTLGTGWNTLIGAVSVDGTLSHSKQDNGDVFDG HHHHHHHCCHHEEEHHCCEEEECCCCEEEECCCHHHEEEEEEECCCCCCCCCCCCCEECC ESYQIAWNKYLPQSATHFSLAAYRYSSRDYRTFNDHVWANNRDNYRRDDDDIYDIADYYE CCEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHH NDFGRKNTFTLNINQTLPDGWGYFTASALWRDYWGRSGTGKDYQLSYSNTWQRLSFTLSA CCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEEEEEE TQTYDSDNREDKRFNIYLSIPLTWGVKENGGNRDIHLSNSTTFDDQGYEANNTSLSGTFG EEECCCCCCCCCEEEEEEEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCEEECCCC NRDQFNYTTNLSQQRQEHQTTFGGSVTWNAPLATVGGSYSQSNQYHQVGGNIQGGLVAWA CCCCCEEECCHHHHHHHHHHHCCCEEEECCCCEECCCCCCCCCCEEECCCCCCCCEEEEE DGVHLASRLNDTIAIINAPYLEGAAVQGRPYLRTNAKGYAVFEALTPYRQNFISLDVSES CCHHHHHHCCCEEEEEECCCCCCCEECCCCCEEECCCCEEEEEHHCHHHHCEEEEEECCC ESDVALLGNRKVTVPYRGAVVVVDFETETSKPFYFLARRADGEPLTFGYEVEDDERNNVG CCCEEEECCEEEEEEECCEEEEEEECCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCEE LVGQGSRVFIRTEKVPVSVKVATDKQQGLFCKITFDKQIDENNVYICR EEECCCEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCCCCEEEEC >Mature Secondary Structure MEKLNAITLSLFAALLTSPAWAEEETFDTNFMFGGLKGEKVSRYQIDSTKPMAGVYEMDV CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCEEEEEE YVNKEWRGTYEVNIQDDPDSTCISPDLIASLGIKFTPQSTTVENECIALKTVVHGGSVSY EECCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEECCCCCCCCCCEEEEEEEEECCCCEE DTAAFNLYLSVPQAYVLEYEAGYASPETWDRGINAFYTSYYASEYYSHYKSGGSEKNTYA CEEEEEEEEECCCEEEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHH NFVSGLNLLGWQLHSNANFSKSDNSAGKWQSNTLYLERDFPAVLGTTRLGEQYTSGDMFD HHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHCCCCCCCCCCCCCCEE TVRFRGVRFWRDMQMLPHSKQNFAPVVRGVAQSNALVTVEQNGFIVYQKEVPPGPFVFED HHHHCEEHEEHHHHHCCCCCCCHHHHHHHHHCCCEEEEEECCCEEEEECCCCCCCEEEEE LQLAGGGADLDVSVKEADGTVSRFIVPYSSVPNMVQPGVAKYDFAAGRSRIEGASQQTDF EEEECCCCCEEEEEECCCCCEEEEEEECCCCCCHHCCCCCEEEHHCCHHHHCCCCCCHHH LQGTYQYGVNNLLTLYGGTMLASDYRSFTLGTGWNTLIGAVSVDGTLSHSKQDNGDVFDG HHHHHHHCCHHEEEHHCCEEEECCCCEEEECCCHHHEEEEEEECCCCCCCCCCCCCEECC ESYQIAWNKYLPQSATHFSLAAYRYSSRDYRTFNDHVWANNRDNYRRDDDDIYDIADYYE CCEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHH NDFGRKNTFTLNINQTLPDGWGYFTASALWRDYWGRSGTGKDYQLSYSNTWQRLSFTLSA CCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEEEEEE TQTYDSDNREDKRFNIYLSIPLTWGVKENGGNRDIHLSNSTTFDDQGYEANNTSLSGTFG EEECCCCCCCCCEEEEEEEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCEEECCCC NRDQFNYTTNLSQQRQEHQTTFGGSVTWNAPLATVGGSYSQSNQYHQVGGNIQGGLVAWA CCCCCEEECCHHHHHHHHHHHCCCEEEECCCCEECCCCCCCCCCEEECCCCCCCCEEEEE DGVHLASRLNDTIAIINAPYLEGAAVQGRPYLRTNAKGYAVFEALTPYRQNFISLDVSES CCHHHHHHCCCEEEEEECCCCCCCEECCCCCEEECCCCEEEEEHHCHHHHCEEEEEECCC ESDVALLGNRKVTVPYRGAVVVVDFETETSKPFYFLARRADGEPLTFGYEVEDDERNNVG CCCEEEECCEEEEEEECCEEEEEEECCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCEE LVGQGSRVFIRTEKVPVSVKVATDKQQGLFCKITFDKQIDENNVYICR EEECCCEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503; 9097040 [H]