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The map label for this gene is intR [H]

Identifier: 194738149

GI number: 194738149

Start: 1720297

End: 1720437

Strand: Direct

Name: intR [H]

Synonym: SeSA_A1776

Alternate gene names: 194738149

Gene position: 1720297-1720437 (Clockwise)

Preceding gene: 194733971

Following gene: 194735405

Centisome position: 36.53

GC content: 49.65

Gene sequence:

>141_bases
TTGACGGCAGGAGCGAACCCGGCATTTATAGCCGGCCAAATGGGGCATGAAACTGCGCAGATGGTGTATGAAATTTACGG
TATGTGGATTGATGACATGAACGACGAACAGGTAGCGATGTTGAATGCGCGGTTATCGTAG

Upstream 100 bases:

>100_bases
ATACAGTTGACAATATCCGAAGGTACTATCTCTATTAAAACGTGCTGGCATTCGTCGCTGTAATCCGTACCATACGCGAC
ATACTTTTGCCTGCTGGCTG

Downstream 100 bases:

>100_bases
TTGCAAAGTTTGCCCCCAATTTGCCCCATTTAGTACCAGAGAACTGAAATAATGCAAGAAATTCAAAAGAATACAAAGAA
AGAACAATACAACCTGAACA

Product: Rac prophage; integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 46; Mature: 45

Protein sequence:

>46_residues
MTAGANPAFIAGQMGHETAQMVYEIYGMWIDDMNDEQVAMLNARLS

Sequences:

>Translated_46_residues
MTAGANPAFIAGQMGHETAQMVYEIYGMWIDDMNDEQVAMLNARLS
>Mature_45_residues
TAGANPAFIAGQMGHETAQMVYEIYGMWIDDMNDEQVAMLNARLS

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1787607, Length=46, Percent_Identity=93.4782608695652, Blast_Score=100, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR022000
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF12167 DUF3596; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 5094; Mature: 4963

Theoretical pI: Translated: 3.82; Mature: 3.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
13.0 %Met     (Translated Protein)
13.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
11.1 %Met     (Mature Protein)
11.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAGANPAFIAGQMGHETAQMVYEIYGMWIDDMNDEQVAMLNARLS
CCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCC
>Mature Secondary Structure 
TAGANPAFIAGQMGHETAQMVYEIYGMWIDDMNDEQVAMLNARLS
CCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]