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The map label for this gene is ompS1 [H]

Identifier: 194737988

GI number: 194737988

Start: 2054736

End: 2055938

Strand: Direct

Name: ompS1 [H]

Synonym: SeSA_A2155

Alternate gene names: 194737988

Gene position: 2054736-2055938 (Clockwise)

Preceding gene: 194737351

Following gene: 194734800

Centisome position: 43.63

GC content: 50.46

Gene sequence:

>1203_bases
ATGAACAGAAAAGTTCTGGCACTGCTTGTCCCGGCGTTATTAGTGGCAGGCGCAGCAAATGCGGCTGAAATTTATAATAA
AAATGGCAACAAACTCGACCTGTACGGCAAAGTTGATGGTCTGCGTTACTTCTCTGACAATGCAGGCGACGATGGCGACC
AGTCCTACGCCCGTATTGGCTTTAAAGGCGAAACGCAAATCAACGATATGCTGACCGGCTATGGTCAGTGGGAATACAAC
ATTAAGGTAAACACCACCGAAGGCGAAGGTGCAAACTCCTGGACTCGTCTGGGCTTTGCCGGTCTGAAATTCGGCGAGTA
CGGCTCTTTCGATTATGGCCGTAACTATGGTGTTATCTACGACATTGAAGCCTGGACCGATGCGCTGCCGGAATTCGGCG
GTGATACTTATACCCAGACCGATGTCTATATGCTGGGCAGAACCAACGGCGTTGCTACCTACCGTAATACCGACTTCTTC
GGTCTGGTGGAAGGCCTGAACTTCGCGTTGCAGTACCAGGGTAATAATGAAGATCCTGGCGCAGGCGAAGGAACAACCAA
CGGCAGCGATGCAGATAGTGGTACTCGCAAACTGGCCCGTGAAAACGGCGACGGTTTCGGTATGTCTACCTCCTACGACT
TTGACTTCGGGTTAAGCCTGGGGGCGGCCTACTCTTCCTCTGACCGTACGGACAATCAGGTTGCTAGTGGGCGTGGTGAT
GGCCATCATTACTATGGCAATAGCTATTCCGGCGGTGAAACTGCCGAAGCCTGGACCGTAGGTGCCAAATATGACGCCTA
CAATGTTTACCTGGCGGCCATGTACGCTGAAACCCGCAACATGACCTATTATGGCGGTGGCGATGGCGGTGGCGGTGGCG
GCGGTATCGCTAACAAAACCCAGAACTTTGAAGTGGTTGCGCAGTATCAGTTCGATTTCGGTCTGCGTCCGTCCATCGCC
TACTTGCAGTCTAAGGGCAAAGATTTAGGCGGCCAGGATATGGATAGCCGTGGTAACTATCGTTACACCGACAAAGATCT
GGTTAAATATGTTGACGTTGGTATGACTTACTACTTCAACAAAAATATGTCCACCTACGTTGATTATAAAATCAACCTGC
TGGACGAAGATGATGACTTCTACGCAAACAACGGTATTGCAACCGATGATATCGTAGGTGTTGGTCTGGTCTACCAGTTC
TAA

Upstream 100 bases:

>100_bases
TATTTTTTAAATTCCATGAACTTCATAGAATAGTATCAATTTGTAGTTTTGTTGAAGTGGCTACATATTCATATAAATTA
TTATCATAAGGGAATACATA

Downstream 100 bases:

>100_bases
GACGCTTTATGTTATTCAAGCCCGTGCTTAGCGCGGGCTTGTTATTATAGGGCAAGAATTAAATAACGGATAACGGCGCA
AAGACAGGTGACCTGGTTTC

Product: outer membrane protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MNRKVLALLVPALLVAGAANAAEIYNKNGNKLDLYGKVDGLRYFSDNAGDDGDQSYARIGFKGETQINDMLTGYGQWEYN
IKVNTTEGEGANSWTRLGFAGLKFGEYGSFDYGRNYGVIYDIEAWTDALPEFGGDTYTQTDVYMLGRTNGVATYRNTDFF
GLVEGLNFALQYQGNNEDPGAGEGTTNGSDADSGTRKLARENGDGFGMSTSYDFDFGLSLGAAYSSSDRTDNQVASGRGD
GHHYYGNSYSGGETAEAWTVGAKYDAYNVYLAAMYAETRNMTYYGGGDGGGGGGGIANKTQNFEVVAQYQFDFGLRPSIA
YLQSKGKDLGGQDMDSRGNYRYTDKDLVKYVDVGMTYYFNKNMSTYVDYKINLLDEDDDFYANNGIATDDIVGVGLVYQF

Sequences:

>Translated_400_residues
MNRKVLALLVPALLVAGAANAAEIYNKNGNKLDLYGKVDGLRYFSDNAGDDGDQSYARIGFKGETQINDMLTGYGQWEYN
IKVNTTEGEGANSWTRLGFAGLKFGEYGSFDYGRNYGVIYDIEAWTDALPEFGGDTYTQTDVYMLGRTNGVATYRNTDFF
GLVEGLNFALQYQGNNEDPGAGEGTTNGSDADSGTRKLARENGDGFGMSTSYDFDFGLSLGAAYSSSDRTDNQVASGRGD
GHHYYGNSYSGGETAEAWTVGAKYDAYNVYLAAMYAETRNMTYYGGGDGGGGGGGIANKTQNFEVVAQYQFDFGLRPSIA
YLQSKGKDLGGQDMDSRGNYRYTDKDLVKYVDVGMTYYFNKNMSTYVDYKINLLDEDDDFYANNGIATDDIVGVGLVYQF
>Mature_400_residues
MNRKVLALLVPALLVAGAANAAEIYNKNGNKLDLYGKVDGLRYFSDNAGDDGDQSYARIGFKGETQINDMLTGYGQWEYN
IKVNTTEGEGANSWTRLGFAGLKFGEYGSFDYGRNYGVIYDIEAWTDALPEFGGDTYTQTDVYMLGRTNGVATYRNTDFF
GLVEGLNFALQYQGNNEDPGAGEGTTNGSDADSGTRKLARENGDGFGMSTSYDFDFGLSLGAAYSSSDRTDNQVASGRGD
GHHYYGNSYSGGETAEAWTVGAKYDAYNVYLAAMYAETRNMTYYGGGDGGGGGGGIANKTQNFEVVAQYQFDFGLRPSIA
YLQSKGKDLGGQDMDSRGNYRYTDKDLVKYVDVGMTYYFNKNMSTYVDYKINLLDEDDDFYANNGIATDDIVGVGLVYQF

Specific function: Unknown

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1787641, Length=381, Percent_Identity=66.6666666666667, Blast_Score=491, Evalue=1e-140,
Organism=Escherichia coli, GI1788544, Length=400, Percent_Identity=63.75, Blast_Score=447, Evalue=1e-127,
Organism=Escherichia coli, GI1786436, Length=403, Percent_Identity=54.3424317617866, Blast_Score=404, Evalue=1e-114,
Organism=Escherichia coli, GI1787160, Length=407, Percent_Identity=54.0540540540541, Blast_Score=372, Evalue=1e-104,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 43672; Mature: 43672

Theoretical pI: Translated: 4.15; Mature: 4.15

Prosite motif: PS00576 GRAM_NEG_PORIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRKVLALLVPALLVAGAANAAEIYNKNGNKLDLYGKVDGLRYFSDNAGDDGDQSYARIG
CCCCHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEEECCCEEEECCCCCCCCCCCEEEEC
FKGETQINDMLTGYGQWEYNIKVNTTEGEGANSWTRLGFAGLKFGEYGSFDYGRNYGVIY
CCCCCCHHHHHCCCCEEEEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
DIEAWTDALPEFGGDTYTQTDVYMLGRTNGVATYRNTDFFGLVEGLNFALQYQGNNEDPG
ECHHHHHHHHHCCCCCCEECEEEEEECCCCEEEEECCCHHEEECCCCEEEEECCCCCCCC
AGEGTTNGSDADSGTRKLARENGDGFGMSTSYDFDFGLSLGAAYSSSDRTDNQVASGRGD
CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHCCCCC
GHHYYGNSYSGGETAEAWTVGAKYDAYNVYLAAMYAETRNMTYYGGGDGGGGGGGIANKT
CCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEEEEHHCCEEEECCCCCCCCCCCCCCCC
QNFEVVAQYQFDFGLRPSIAYLQSKGKDLGGQDMDSRGNYRYTDKDLVKYVDVGMTYYFN
CCEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCEEECHHHHHHHHHCCEEEEEC
KNMSTYVDYKINLLDEDDDFYANNGIATDDIVGVGLVYQF
CCCCEEEEEEEEEECCCCCEEECCCCCCHHEEEEEEEEEC
>Mature Secondary Structure
MNRKVLALLVPALLVAGAANAAEIYNKNGNKLDLYGKVDGLRYFSDNAGDDGDQSYARIG
CCCCHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEEECCCEEEECCCCCCCCCCCEEEEC
FKGETQINDMLTGYGQWEYNIKVNTTEGEGANSWTRLGFAGLKFGEYGSFDYGRNYGVIY
CCCCCCHHHHHCCCCEEEEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
DIEAWTDALPEFGGDTYTQTDVYMLGRTNGVATYRNTDFFGLVEGLNFALQYQGNNEDPG
ECHHHHHHHHHCCCCCCEECEEEEEECCCCEEEEECCCHHEEECCCCEEEEECCCCCCCC
AGEGTTNGSDADSGTRKLARENGDGFGMSTSYDFDFGLSLGAAYSSSDRTDNQVASGRGD
CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHCCCCC
GHHYYGNSYSGGETAEAWTVGAKYDAYNVYLAAMYAETRNMTYYGGGDGGGGGGGIANKT
CCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEEEEHHCCEEEECCCCCCCCCCCCCCCC
QNFEVVAQYQFDFGLRPSIAYLQSKGKDLGGQDMDSRGNYRYTDKDLVKYVDVGMTYYFN
CCEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCEEECHHHHHHHHHCCEEEEEC
KNMSTYVDYKINLLDEDDDFYANNGIATDDIVGVGLVYQF
CCCCEEEEEEEEEECCCCCEEECCCCCCHHEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7789812; 11677608; 12644504 [H]