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The map label for this gene is ydcI [H]

Identifier: 194737980

GI number: 194737980

Start: 1685615

End: 1686538

Strand: Direct

Name: ydcI [H]

Synonym: SeSA_A1743

Alternate gene names: 194737980

Gene position: 1685615-1686538 (Clockwise)

Preceding gene: 194734806

Following gene: 194735215

Centisome position: 35.8

GC content: 54.76

Gene sequence:

>924_bases
ATGGAAAAAAATGGTCTGTTTAGTCAGCGCATTCGGTTGCGCCACCTTCATACATTTGTCGCCGTTGCGCAACAGGGAAC
GCTGGGGCGCGCGGCTGAAACCCTTAACCTGAGCCAGCCAGCGCTTTCTAAAACGCTGAACGAACTGGAACAACTCACCG
GAACCCGTCTGTTCGAACGCGGGCGACTGGGCGCGCAATTAACGGTTCCTGGCGAACAATTTTTGACTCATGCGGTAAAA
GTATTAGATGCATTGAATACCGCCGGGCAGGCGCTGAATCGCAAAGAGGACGCCAGCGCCGATGTGGTGCGTGTTGGCGC
GCTCCCCACCGCTGCGCTGGGTATACTCCCGGCGGCTATTGGGCGGTTCCATCAACAGCAAAAATCGACCTCGTTACAGG
TCGCGACCATGAACAATACGATGTTGCTTGCGGGTCTCAAGTCAGGCGAGATCGATCTGGGTATTGGCCGCATGTCAGAC
CCGGAATTAATGGGCGGTTTAAATTACGAACTGCTGTTTTTAGAATCGCTTAAATTAGTGGTACGCCCCGGTCATCCCCT
GTTACAGGAGACGATCACGCTCAGTCGGGTTATGGAATGGCCGGTAGTCGTCTCGCCAAAAGGCACGGTACCGCGCCAGA
ATGCGGAAGCCCTGTTGCAAAGCCAGGGGTGTAAAATGCCTGCCGGATGTATCGAAACGCTATCCGCATCGTTATCACGA
CAACTTACCGTAGATTACGATTACGTCTGGTTCGTCCCCTCTGGCGCGGTTAAAGAAGATCTTCGCCAGGCAACGCTGGT
CTCATTACCCGTGCCGACCCAGAGCGCAGGCGAACCGATAGGTATTCTTACGCGAGTTGATATCCCGCTCTCAACCGGGG
CGCAAATGCTGATTGCGGCGATCCGTAAATCGATGCCGCTGTGA

Upstream 100 bases:

>100_bases
TAACTTGAAATGGTAAAATGTTAATAATATTTTGCTATCAGGTTATCAAAAACAAACAACTTTACTTGTCACCCGCACGG
CTCTGTTTTTAACATCGCTT

Downstream 100 bases:

>100_bases
TAGCGGCTGTCGGGCATTAAACGCGCCCGCGGCTAAAATAGCCCGCTGGCGCGACGCTCATTAAAGGAAGGATGATCGCA
TCGTCGCGCCAGTATCCTGT

Product: LysR substrate binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MEKNGLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGTRLFERGRLGAQLTVPGEQFLTHAVK
VLDALNTAGQALNRKEDASADVVRVGALPTAALGILPAAIGRFHQQQKSTSLQVATMNNTMLLAGLKSGEIDLGIGRMSD
PELMGGLNYELLFLESLKLVVRPGHPLLQETITLSRVMEWPVVVSPKGTVPRQNAEALLQSQGCKMPAGCIETLSASLSR
QLTVDYDYVWFVPSGAVKEDLRQATLVSLPVPTQSAGEPIGILTRVDIPLSTGAQMLIAAIRKSMPL

Sequences:

>Translated_307_residues
MEKNGLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGTRLFERGRLGAQLTVPGEQFLTHAVK
VLDALNTAGQALNRKEDASADVVRVGALPTAALGILPAAIGRFHQQQKSTSLQVATMNNTMLLAGLKSGEIDLGIGRMSD
PELMGGLNYELLFLESLKLVVRPGHPLLQETITLSRVMEWPVVVSPKGTVPRQNAEALLQSQGCKMPAGCIETLSASLSR
QLTVDYDYVWFVPSGAVKEDLRQATLVSLPVPTQSAGEPIGILTRVDIPLSTGAQMLIAAIRKSMPL
>Mature_307_residues
MEKNGLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGTRLFERGRLGAQLTVPGEQFLTHAVK
VLDALNTAGQALNRKEDASADVVRVGALPTAALGILPAAIGRFHQQQKSTSLQVATMNNTMLLAGLKSGEIDLGIGRMSD
PELMGGLNYELLFLESLKLVVRPGHPLLQETITLSRVMEWPVVVSPKGTVPRQNAEALLQSQGCKMPAGCIETLSASLSR
QLTVDYDYVWFVPSGAVKEDLRQATLVSLPVPTQSAGEPIGILTRVDIPLSTGAQMLIAAIRKSMPL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081904, Length=307, Percent_Identity=83.0618892508143, Blast_Score=531, Evalue=1e-152,
Organism=Escherichia coli, GI1787601, Length=264, Percent_Identity=29.1666666666667, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1788887, Length=185, Percent_Identity=34.5945945945946, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI157672245, Length=227, Percent_Identity=30.8370044052863, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1787879, Length=195, Percent_Identity=32.3076923076923, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1790262, Length=217, Percent_Identity=29.0322580645161, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788748, Length=289, Percent_Identity=26.643598615917, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI145693105, Length=195, Percent_Identity=24.1025641025641, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1790399, Length=301, Percent_Identity=24.2524916943522, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI2367136, Length=150, Percent_Identity=31.3333333333333, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789204, Length=181, Percent_Identity=29.8342541436464, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33086; Mature: 33086

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKNGLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGTRLFER
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
GRLGAQLTVPGEQFLTHAVKVLDALNTAGQALNRKEDASADVVRVGALPTAALGILPAAI
CCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHH
GRFHQQQKSTSLQVATMNNTMLLAGLKSGEIDLGIGRMSDPELMGGLNYELLFLESLKLV
HHHHHHHHCCCEEEEEECCEEEEEECCCCCEEEECCCCCCHHHHCCCCEEEEEEEHHHHE
VRPGHPLLQETITLSRVMEWPVVVSPKGTVPRQNAEALLQSQGCKMPAGCIETLSASLSR
ECCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHC
QLTVDYDYVWFVPSGAVKEDLRQATLVSLPVPTQSAGEPIGILTRVDIPLSTGAQMLIAA
CEEEEEEEEEEECCCHHHHHHHHHHEEECCCCCCCCCCCEEEEEEECCCCCCCHHHHHHH
IRKSMPL
HHHHCCC
>Mature Secondary Structure
MEKNGLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGTRLFER
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
GRLGAQLTVPGEQFLTHAVKVLDALNTAGQALNRKEDASADVVRVGALPTAALGILPAAI
CCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHH
GRFHQQQKSTSLQVATMNNTMLLAGLKSGEIDLGIGRMSDPELMGGLNYELLFLESLKLV
HHHHHHHHCCCEEEEEECCEEEEEECCCCCEEEECCCCCCHHHHCCCCEEEEEEEHHHHE
VRPGHPLLQETITLSRVMEWPVVVSPKGTVPRQNAEALLQSQGCKMPAGCIETLSASLSR
ECCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHC
QLTVDYDYVWFVPSGAVKEDLRQATLVSLPVPTQSAGEPIGILTRVDIPLSTGAQMLIAA
CEEEEEEEEEEECCCHHHHHHHHHHEEECCCCCCCCCCCEEEEEEECCCCCCCHHHHHHH
IRKSMPL
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]